{"id":3177,"date":"2014-01-06T21:34:58","date_gmt":"2014-01-06T21:34:58","guid":{"rendered":"https:\/\/mycor.iam.inrae.fr\/IAM\/?page_id=3177"},"modified":"2016-10-31T08:56:42","modified_gmt":"2016-10-31T08:56:42","slug":"publications-2013","status":"publish","type":"page","link":"https:\/\/mycor.iam.inrae.fr\/IAM\/?page_id=3177","title":{"rendered":"Publications 2013"},"content":{"rendered":"
    \n
  1. CCAAT-box binding transcription factors in plants: Y so many?<\/a> T. Laloum, S. De Mita, P. Gamas, M. Baudin, A. Niebel. Trends in Plant Science.<\/li>\n
  2. Towards a refined classification of class I dithiol glutaredoxins from poplar: biochemical basis for the definition of two subclasses<\/a>.J Couturier, JP Jacquot, N Rouhier.\u00a0Frontiers in Plant Science 4, 518<\/li>\n
  3. Diversity and structure of bacterial communities associated with Phanerochaete chrysosporium during wood decay.<\/a>\u00a0V Herv\u00e9, X Le Roux, S Uroz, E Gelhaye, P Frey\u2010Klett.\u00a0Environmental Microbiology<\/li>\n
  4. Development of roGFP2-derived redox probes for measurement of the glutathione redox potential in the cytosol of severely glutathione-deficient rml1 seedlings<\/a>.\u00a0I Aller, N Rouhier, A Meyer. Frontiers in Plant Science.<\/li>\n
  5. Transcriptomic profiles of Heterobasidion annosum under abiotic stresses and during saprotrophic growth in bark, sapwood and heartwood<\/a>\u00a0T Raffaello, H Chen, A Kohler, FO Asiegbu\u00a0Environmental microbiology<\/li>\n
  6. The genome of an arbuscular mycorrhizal fungus provides insights into the oldest plant symbiosis<\/a>. E Tisserant, M Malbreil, A Kuo, A Kohler, et al. Proceedings of the National Academy of Sciences<\/li>\n
  7. Expression Analysis of the Impact of Culture Filtrates from the Biocontrol Agent, Phlebiopsis gigantea on the Conifer Pathogen, Heterobasidion annosum ss Transcriptome<\/a>\u00a0AC Mgbeahuruike, A Kohler, FO Asiegbu\u00a0Microbial ecology 66 (3), 669-681<\/li>\n
  8. Structure and function of bacterial communities in ageing soils: Insights from the Mendocino ecological staircase<\/a>.\u00a0S Uroz, JJ Tech, NA Sawaya, P Frey-Klett, JHJ Leveau.\u00a0Soil Biology and Biochemistry<\/li>\n
  9. Diversification of Fungal Specific Class A Glutathione Transferases in Saprotrophic Fungi<\/a>.\u00a0Mathieu Y, Prosper P, Favier F, Harvengt L, Didierjean C, et al. PLoS one<\/li>\n
  10. Biodegradation of Reactive Blue 4 and Orange G by Pycnoporus sanguineus Strain Isolated in Gabon<\/a>\u00a0A Christiane, M Steeve, ST Jean-Bosco, NM Kor, I Brama.\u00a0Journal of Bioremediation and Biodegradation<\/li>\n
  11. Density mapping of decaying wood using X-ray computed tomography.<\/a>\u00a0V Herv\u00e9, F Mothe, C Freyburger, E Gelhaye and P. Frey-Klett. International Biodeterioration and Biodegradation<\/li>\n
  12. Evolution of a symbiotic receptor through gene duplications in the legume\u2013rhizobium mutualism<\/a>.\u00a0De Mita S., A. Streng, T. Bisseling and R. Geurts. New\u00a0phytologist<\/li>\n
  13. Detecting selection along environmental gradients: analysis of eight methods and their effectiveness for outbreeding and selfing populations.<\/a>\u00a0De Mita S., A.-C. Thuillet, L. Gay, N. Ahmadi, S.. Manel, J. Ronfort and Y. Vigouroux.\u00a0\u00a0Molecular Ecology<\/li>\n
  14. Monothiol glutaredoxin-BolA interactions: redox control of Arabidopsis thaliana BolA2 and SufE1<\/a>\u00a0J Couturier, HC Wu, T Dhalleine, H P\u00e9geot, D Sudre\u2026 – Molecular Plant, 2013.<\/li>\n
  15. Transcriptome analysis of poplar rust telia reveals overwintering adaptation and tightly coordinated karyogamy and meiosis processes.<\/a>\u00a0S Hacquart, C Delaruelle, P Frey, E Tisserant, A Kohler, S Duplessis.\u00a0Frontiers in Plant Science<\/li>\n
  16. Overexpression, purification and enzymatic characterization of a recombinant plastidial glucose-6-phosphate dehydrogenase from barley (Hordeum vulgare cv. Nure<\/em>) roots<\/a>\u00a0M Cardi, K Chibani, D Castiglia, D Cafasso, E Pizzo, N Rouhier, JP Jacquot …Plant Physiology and Biochemistry<\/li>\n
  17. Phytophthora on Alnus spp.(alders)<\/a>\u00a0B Mar\u00e7ais, C Husson.\u00a0JKI Data sheets-Plant Diseases and Diagnosis.<\/li>\n
  18. Mycorrhizas and\u00a0New Phytologist<\/em>:\u00a0une vraie histoire d’amour<\/em><\/a>\u00a0C MA Selosse, F Martin.\u00a0New Phytologist<\/li>\n
  19. A short-term mineral amendment impacts the mineral weathering bacterial communities in an acidic forest soil<\/a>.\u00a0C Lepleux, S Uroz, C Collignon, JL Churin, MP Turpault, P Frey-Klett.\u00a0Research in microbiology<\/li>\n
  20. Black truffle\u2010associated bacterial communities during the development and maturation of Tuber melanosporum ascocarps and putative functional roles<\/a>.\u00a0S Antony\u2010Babu, A Deveau, JD Van Nostrand, J Zhou, F Le Tacon, C Robin, P \u2026\u00a0Environmental Microbiology<\/li>\n
  21. Carbohydrate utilization and metabolism is highly differentiated in\u00a0Agaricus bisporus<\/em><\/a>\u00a0A Patyshakuliyeva, E Jurak, A Kohler, A Baker, E Battaglia, W de Bruijn, KS \u2026\u00a0BMC Genomics 14 (1), 663<\/li>\n
  22. Effects of the use of biocontrol agent (Phlebiopsis gigantea<\/em>) on fungal communities on the surface of\u00a0Picea abies<\/em>\u00a0stumps<\/a>.\u00a0E Terhonen, H Sun, M Bu\u00e9e, R Kasanen, L Paulin, FO Asiegbu.\u00a0Forest Ecology and Management 310, 428-433<\/li>\n
  23. Monothiol Glutaredoxins Can Bind Linear [Fe 3 S 4]+ and [Fe 4 S 4] 2+ Clusters in Addition to [Fe 2 S 2] 2+ Clusters: Spectroscopic Characterization and Functional Implications<\/a>.\u00a0B Zhang, S Bandyopadhyay, P Shakamuri, SG Naik, BH Huynh, J Couturier, N \u2026.\u00a0Journal of the American Chemical Society<\/li>\n
  24. Extreme diversification of the mating type\u2013high\u2010mobility group (MATA\u2010HMG) gene family in a plant\u2010associated arbuscular mycorrhizal fungus<\/a>.\u00a0R Riley, P Charron, A Idnurm, L Farinelli, Y Dalp\u00e9, F Martin, N Corradi.\u00a0New Phytologist<\/li>\n
  25. Arabidopsis thaliana<\/em>\u00a0Nfu2 accommodates [2Fe-2S] or [4Fe-4S] clusters and is competent for in vitro maturation of chloroplast [2Fe-2S] and [4Fe-4S] cluster-containing proteins<\/a>.\u00a0H Gao, S Subramanian, J Couturier, SG Naik, SK Kim, T Leustek, DB Knaff, HC \u2026\u00a0Biochemistry<\/li>\n
  26. Functional assignment of KEOPS\/EKC complex subunits in the biosynthesis of the universal t6A tRNA modification<\/a>.\u00a0L Perrochia, D Guetta, A Hecker, P Forterre, T Basta\u00a0Nucleic Acids Research<\/li>\n
  27. Evidence of gene flow between sympatric populations of the Middle East\u2010Asia Minor 1 and Mediterranean putative species of Bemisia abaci.\u00a0<\/a>A Tahiri, F Halkett, M Granier, G Gueguen, M Peterschmitt.\u00a0Ecology and Evolution<\/li>\n
  28. Community genetics in the time of next\u2010generation molecular technologies<\/a>.\u00a0F Gugerli, R Brandl, B Castagneyrol, A Franc, H Jactel, HP Koelewijn, F \u2026.\u00a0Molecular Ecology 22 (12), 3198-3207<\/li>\n
  29. Microbe-independent entry of oomycete RxLR effectors and fungal RxLR-like effectors into plant and animal cells is specific and reproducible<\/a>.\u00a0BM Tyler, SD Kale, Q Wang, K Tao, HR Clark, K Drews, V Antignani, A Rumore …Molecular Plant-Microbe Interactions 26 (6), 611-616<\/li>\n
  30. The iron-sulfur cluster assembly machineries in plants: current knowledge and open questions<\/a>.\u00a0J Couturier, B Touraine, JF Briat, F Gaymard, N Rouhier.\u00a0Frontiers in Plant Science 4, 259<\/li>\n
  31. Carbon Transfer from the Host to\u00a0Tuber melanosporum<\/em>\u00a0Mycorrhizas and Ascocarps Followed Using a 13C Pulse-Labeling Technique\u00a0<\/a>.\u00a0F Le Tacon, B Zeller, C Plain, C Hossann, C Br\u00e9chet, C Robin.\u00a0PloS one 8 (5), e64626 \u00a0(pdf<\/a>)<\/li>\n
  32. Mechanisms of nitrosylation and denitrosylation of cytoplasmic glyceraldehyde-3-phosphate dehydrogenase from\u00a0Arabidopsis thaliana<\/em><\/a>.\u00a0M Zaffagnini, S Morisse, M Bedhomme, CH Marchand, M Festa, N Rouhier, SD \u2026\u00a0Journal of Biological Chemistry<\/li>\n
  33. Atypical features of a Ure2p glutathione transferase from\u00a0Phanerochaete chrysosporium<\/em><\/a>.\u00a0A Thuillier, T Roret, F Favier, E Gelhaye, JP Jacquot, C Didierjean, M Morel …FEBS Letters<\/li>\n
  34. Genome-wide survey of repetitive DNA elements in the button mushroom\u00a0Agaricus\u00a0<\/em><\/a>bosporus<\/i>.\u00a0M Foulongne-Oriol, C Murat, R Castanera, L Ram\u00edrez, ASM Sonnenberg.\u00a0Fungal Genetics and Biology<\/li>\n
  35. Optimization of a real-time PCR assay for the detection of the quarantine pathogen\u00a0Melampsora medusae f. sp. deltoidae<\/em><\/a>.\u00a0AL Boutigny, C Guinet, A Vialle, R Hamelin, A Andrieux, P Frey, C Husson, R Ioos.\u00a0Fungal Biology<\/li>\n
  36. An improved method compatible with metagenomic analyses to extract genomic DNA from soils in\u00a0Tuber melanosporum<\/em>\u00a0orchards<\/a>.\u00a0S Antony\u2010Babu, C Murat, A Deveau, F Tacon, P Frey\u2010Klett, S Uroz.\u00a0Journal of Applied Microbiology<\/li>\n
  37. Biotrophic transportome in mutualistic plant\u2013fungal interactions<\/a>.\u00a0L Casieri, NA Lahmidi, J Doidy, C Veneault-Fourrey, A Migeon, L Bonneau, PE \u2026\u00a0Mycorrhiza, 1-29<\/li>\n
  38. Fine\u2010scale spatial genetic structure of the black truffle (Tuber melanosporum<\/em>) investigated with neutral microsatellites and functional mating type genes<\/a>.\u00a0C Murat, A Rubini, C Riccioni, H la Varga, E Akroume, B Belfiori, M Guaragno \u2026\u00a0New Phytologist<\/li>\n
  39. Cysteine-based redox regulation and signalling in plants\u00a0<\/a>J. Couturier,\u00a0K. Chibani, JP Jacquot\u00a0Jacquot and N. Rouhier. Frontiers in Plant Proteomics<\/li>\n
  40. Microbe-independent entry of oomycete RxLR effectors and fungal RxLR-like effectors into plant and animal cells is specific and reproducible<\/a>\u00a0BM Tyler, SD Kale, Q Wang, K Tao, HR Clark, K Drews, V Antignani, A Rumore …\u00a0Molecular Plant-Microbe Interactions<\/li>\n
  41. Biogeographical patterns and determinants of invasion by forest pathogens in Europe<\/a>.\u00a0A Santini, L Ghelardini, C Pace, ML Desprez\u2010Loustau, P Capretti, A …New Phytologist 197 (1), 238-250<\/li>\n
  42. Who is Controlling whom within the Ectomycorrhizal Symbiosis: Insights from Genomic and Functional Analyses<\/a>\u00a0C Veneault\u2010Fourrey, JM Plett, F Martin.\u00a0Molecular Microbial Ecology of the Rhizosphere: Volume 1 & 2, 501-512<\/li>\n
  43. Below-ground fine-scale distribution and soil versus fine root detection of fungal and soil oomycete communities in a French beech forest<\/a>.\u00a0A Coince, O Ca\u00ebl, C Bach, J Lengell\u00e9, C Cruaud, F Gavory, E Morin, C Murat …\u00a0Fungal Ecology<\/li>\n
  44. Laser microdissection and microarray analysis of\u00a0Tuber melanosporum<\/em>\u00a0ectomycorrhizas reveal functional heterogeneity between mantle and Hartig net compartments<\/a>.\u00a0St\u00e9phane Hacquard, Emilie Tisserant, Annick Brun, Val\u00e9rie Legu\u00e9, Francis Martin, Annegret Kohler. \u00a0Environmental Microbiology<\/li>\n
  45. Functional Assays and Metagenomic Analyses Reveals Differences between the Microbial Communities Inhabiting the Soil Horizons of a Norway Spruce Plantation<\/a>.\u00a0S Uroz, P Ioannidis, J Lengelle, A C\u00e9bron, E Morin, M Bu\u00e9e, F Martin.\u00a0PloS one 8 (2), e55929<\/li>\n
  46. First Identification of Polymorphic Microsatellite Markers in the Burgundy Truffle,\u00a0Tuber aestivum<\/em>\u00a0(Tuberacea<\/a>).\u00a0V Molinier, C Murat, E Morin, A Gollotte, D Wipf, F Martin.\u00a0Applications in Plant Sciences 1 (2)<\/li>\n
  47. Involvement of auxin pathways in modulating root architecture during beneficial plant\u2013microorganism interactions<\/a>.\u00a0P Sukumar, V Legu\u00e9, A Vayssi\u00e8res, F Martin, GA Tuskan, UC Kalluri.\u00a0Plant, cell & environment<\/li>\n
  48. Monothiol glutaredoxins and A-type proteins: partners in Fe\u2013S cluster trafficking<\/a>.\u00a0DT Mapolelo, B Zhang, S Randeniya, AN Albetel, H Li, J Couturier, CE Outten ….\u00a0Dalton Transactions 42 (9), 3107-3115<\/li>\n
  49. Redox Homeostasis<\/a>.\u00a0J Messens, N Rouhier, JF Collet.\u00a0Oxidative Stress and Redox Regulation, 59-84<\/li>\n
  50. Redox Regulation in Plants: Glutathione and \u201cRedoxin\u201d Related Families<\/a>.\u00a0JP Jacquot, KJ Dietz, N Rouhier, E Meux, PA Lallement, B Selles, A Hecker.\u00a0Oxidative Stress and Redox Regulation, 213-231<\/li>\n
  51. Functional Profiling and Distribution of the Forest Soil Bacterial Communities Along the Soil Mycorrhizosphere Continuum<\/a>.\u00a0S Uroz, PE Courty, JC Pierrat, M Peter, M Bu\u00e9e, MP Turpault, J Garbaye, P …\u00a0Microbial Ecology, 1-12<\/li>\n
  52. Taxonomic and functional diversity of Streptomyces in a forest soil<\/a>.\u00a0C Bontemps, M Toussaint, PV Revol, L Hotel, M Jeanbille, S Uroz, MP Turpault …\u00a0FEMS Microbiology Letters<\/li>\n
  53. Development and use of new sensitive molecular tools for diagnosis and detection of Melampsora rusts on cultivated poplar<\/a>.\u00a0C Husson, R Ioos, A Andrieux, P Frey.\u00a0Forest Pathology<\/li>\n
  54. Strong Genetic Differentiation Between North American and European Populations of\u00a0Phytophthora alni subsp. uniformis<\/em><\/a>.\u00a0J Aguayo, GC Adams, F Halkett, M Catal, C Husson, Z\u00c1 Nagy, EM Hansen, B …\u00a0Phytopathology 103 (2), 190-199<\/li>\n
  55. Three-year investigations on leaf rust of poplar cultivated for biomass production in Umbria, Central Italy<\/a>.\u00a0L Covarelli, G Beccari, L Tosi, B Fabre, P Frey.\u00a0Biomass and Bioenergy 49, 315-322<\/li>\n
  56. Historical Biogeography and Diversification of Truffles in the Tuberaceae and Their Newly Identified Southern Hemisphere Sister Lineage<\/a>.\u00a0G Bonito, ME Smith, M Nowak, RA Healy, G Guevara, E C\u00e1zares, A Kinoshita, ER …\u00a0PloS one 8 (1), e52765<\/li>\n
  57. 454 Pyrosequencing Analysis of Fungal Assemblages from Geographically Distant, Disparate Soils Reveals Spatial Patterning and a Core Mycobiome<\/a>.\u00a0A Orgiazzi, V Bianciotto, P Bonfante, S Daghino, S Ghignone, A Lazzari, E …\u00a0Diversity 5 (1), 73-98<\/li>\n
  58. Xenomic networks variability and adaptation traits in wood decaying fungi.<\/a>\u00a0M Morel, E Meux, Y Mathieu, A Thuillier, K Chibani, L Harvengt, JP Jacquot …\u00a0Microbial biotechnology<\/li>\n
  59. The Escherichia coli SLC26 homologue YchM (DauA) is a C4\u2010dicarboxylic acid transporter<\/a>.\u00a0E Karinou, ELR Compton, M Morel, A Javelle.\u00a0Molecular Microbiology<\/li>\n
  60. Putative involvement of Thioredoxin h in early response to gravitropic stimulation of poplar stems<\/a>\u00a0W Azri, N Brunel, J Franchel, I Ben Rejeb, JP Jacquot, JL Julien, S Herbette …\u00a0Journal of Plant Physiology<\/li>\n
  61. 454 pyrosequencing analysis of fungal assemblages from geographically distant, disparate soils reveals spatial patterning and a core mycobiome<\/a>
    \nA Orgiazzi, V Bianciotto, P Bonfante, S Daghino, S Ghignone, A Lazzari, …
    \nDiversity 5 (1), 73-98<\/li>\n<\/ol>\n","protected":false},"excerpt":{"rendered":"

    CCAAT-box binding transcription factors in plants: Y so many? T. Laloum, S. De Mita, P. Gamas, M. Baudin, A. Niebel. Trends in Plant Science. Towards a refined classification of class I dithiol glutaredoxins from poplar: biochemical basis for the definition … Continue reading →<\/span><\/a><\/p>\n","protected":false},"author":2,"featured_media":0,"parent":318,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-3177","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/mycor.iam.inrae.fr\/IAM\/index.php?rest_route=\/wp\/v2\/pages\/3177","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/mycor.iam.inrae.fr\/IAM\/index.php?rest_route=\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/mycor.iam.inrae.fr\/IAM\/index.php?rest_route=\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/mycor.iam.inrae.fr\/IAM\/index.php?rest_route=\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/mycor.iam.inrae.fr\/IAM\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=3177"}],"version-history":[{"count":0,"href":"https:\/\/mycor.iam.inrae.fr\/IAM\/index.php?rest_route=\/wp\/v2\/pages\/3177\/revisions"}],"up":[{"embeddable":true,"href":"https:\/\/mycor.iam.inrae.fr\/IAM\/index.php?rest_route=\/wp\/v2\/pages\/318"}],"wp:attachment":[{"href":"https:\/\/mycor.iam.inrae.fr\/IAM\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=3177"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}