{"id":706,"date":"2013-03-31T19:11:46","date_gmt":"2013-03-31T19:11:46","guid":{"rendered":"https:\/\/mycor.iam.inrae.fr\/IAM\/?page_id=706"},"modified":"2026-04-23T08:42:43","modified_gmt":"2026-04-23T08:42:43","slug":"duplessis-s","status":"publish","type":"page","link":"https:\/\/mycor.iam.inrae.fr\/IAM\/?page_id=706","title":{"rendered":"Duplessis S\u00e9bastien"},"content":{"rendered":"

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INRAE ECODIV Division<\/strong><\/p>\n

Ecology & Biodiversity <\/span><\/p>\n

Chief of the ECODIV Division<\/p>\n

INRAE Centre Grand-Est, Nancy<\/p>\n

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Bio<\/strong>: <\/strong>BSc in Biology at Bordeaux University (1995). MSc in Cell Biology and Physiology (1998) and PhD in Plant and Forest Sciences (2001) at Nancy University. Silver medal of the French Academy of Agriculture (2001). Hired research scientist in 2001 at INRA. 1 year sabbatical at Exeter University (2003-2004). HDR diploma from Lorraine University (2012). Region Lorraine Researcher Award (2012). Acad\u00e9mie Stanislas Zivi Award (2012). Appointed INRA Research Director DR2 (2013). Appointed head of the Ecogenomic of interactions<\/em> team in 2013, appointed Deputy Director (DUA) of the Tree-Microbe Interactions<\/em> department in 2018. In charge of the WP1 (Integrative Biology) of the Lab of Excellence Labex ARBRE<\/a> since 2018. Member of the SIReNa Doctoral School<\/a> council at Universit\u00e9 de Lorraine since 2020. Director (DU) of the INRAE\/Universit\u00e9 de Lorraine Tree<\/em>–<\/em><\/a>Microbe<\/em> Interactions <\/em>Joint Unit (UMR IAM) for the 2020-2023 period. EPMRA management training program in 2024 (Ecole Pratique du Management de la Recherche Agronomique, <\/em>INRAE-CIRAD-APT). Appointed Deputy Chief of the Ecology & Biodiversity Division<\/a> (CDA Dept<\/strong> ECODIV<\/strong>) at INRAE<\/strong><\/a> in January 2024. Appointed INRAE 1st class Research Director (DR1) in January 2025. Appointed Chief of the Ecology & Biodiversity Division<\/a> (CD<\/strong> Dept<\/strong> ECODIV<\/strong>) at INRAE<\/strong><\/a>, January 1st 2026.<\/p>\n

My early research was on functional genomics of the ectomycorrhizal symbiosis in the group of Francis Martin (INRA Nancy). I spent 1 year in Nick Talbot\u2019s lab at Exeter University to extend my background in molecular phytopathology (2003-2004), and since 2005, my research in the Ecogenomics <\/em><\/em>team\u00a0<\/em><\/em>has mostly focused on the poplar-poplar rust interaction. My research is part of a pluri-disciplinary scientific project called Mechanism and evolution of the poplar-poplar rust interaction<\/em> which is transversal to the UMR IAM at INRAE Nancy.<\/p>\n

Resume: <\/strong>My research at INRAE aims at elucidating how trees respond to pathogens and how biotroph pathogens are able to develop and feed on trees. Our model is the poplar-poplar rust pathosystem. I mainly use genomics and functional approaches to identify and characterize molecular determinants involved in disease resistance and defense response in poplar, and pathogenicity in the rust fungus Melampsora larici-populina <\/em>as my main model pathosystem. In recent years, I have diversified my research in the frame of international projects using genomics in order to better understand the biology of rust fungi.\u00a0 Progress made in understanding rust fungal biotrophy will help setting new strategies to contain rust diseases.<\/p>\n

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Contact:<\/strong> sebastien.duplessis<at>inrae.fr \/\u00a0Phone, +33 383 39 40 13<\/p>\n

BlueSky:<\/strong> @sebbyrust.bsky.social<\/a><\/p>\n

Links: \u00a0\u00a0<\/strong>HAL\u00a0 \u2014 \u00a0<\/a><\/strong>ORCID<\/a>\u00a0 \u2014 <\/a><\/strong>\u00a0<\/a>Loop.Frontiers<\/a>\u00a0 \u2014 \u00a0<\/a>Google Scholar<\/a><\/p>\n

My research associates within the Tree\/Microbe Interactions Department are Emmanuelle Morin (IAM Ecogenomics of interactions <\/em>team, INRAE); Fabien Halkett and Pascal Frey (IAM Ecology of Forest Fungal Pathogens<\/em> team, INRAE); and Benjamin Petre, Arnaud Hecker and Nicolas Rouhier (IAM Redox and Stress Response<\/em> team, Universit\u00e9 de Lorraine).<\/p>\n

Current PhD and postdocs<\/strong><\/em><\/p>\n

None at the moment.<\/p>\n

Former PhD and postdocs<\/strong><\/em><\/p>\n

\u2022 C\u00e9cile Rinaldi<\/strong>\/Guinet (PhD, 2004-2007, co-advisor, F Martin), now Project Manager engineer at ANSES, Laboratoire de Sant\u00e9 des V\u00e9g\u00e9taux<\/a>, Nancy, France<\/p>\n

\u2022 Mehdi Kaytoue<\/strong> (PhD, 2007-2011, co-advisor, A Napoli, INRIA, LORIA Nancy), now Lecturer at LIRIS<\/a>, Lyon, France<\/p>\n

\u2022 St\u00e9phane Hacquard<\/strong> (PhD, 2008-2011; post-doc fellow, 2012-2013, co-advisor, F Martin), now Group Leader<\/a>\u00a0at MPI, Koln, Germany<\/p>\n

\u2022 Benjamin Petre<\/strong> (PhD CJS INRA 2009-2012, co-advisor, N Rouhier, post-doc CJS INRA 2013-2014 in S Kamoun’s lab at TSL, Norwich, UK); \u00a0since 2018, lecturer<\/a> at Lorraine University (UMR IAM)<\/p>\n

\u2022 Natalya Saveleva<\/strong> (Post-doc ANR, 2013-2014). Employment unknown.<\/p>\n

\u2022 Antoine Persoons<\/strong> (PhD, 2012-2015, co-advisor, S De Mita, F Halkett), post-doc in Diane Saunders<\/a> at the JIC, Norwich, UK; then post-doc at UMR IAM Nancy.<\/p>\n

\u2022 C\u00e9cile Lorrain<\/strong> (PhD CJS INRA 2014-2018, co-advisor A. Hecker); postdoc in Eva Stukenbrock<\/a> Group in Pl\u00f6n\/Kiel (Germany; 2018-2019, postdoc CJS INRA); postodc in Bruce McDonald<\/a>‘s group, plant pathology, ETH Zurich; now Junior Project Leader<\/a>, ETH Zurich.<\/span><\/p>\n

\u2022 Si-Qi Tao<\/strong> (PhD at Beijing Forestry University, Advisor Prof. Ling-Mei Liang). 1-year stay at INRAE Nancy (2018-2019). International collaboration with Profs. Chengming Tian & Ling-Mei Liang. Now Lecturer at Beijing Forestry University<\/a>.<\/p>\n

\u2022 Cl\u00e9mentine Louet<\/strong> (PhD, 2018-2021, co-advisor, P. Frey). Caract\u00e9risation \u00e9volutive et fonctionnelle d\u2019un locus d\u2019avirulence chez l\u2019agent de la rouille du peuplier, Melampsora larici-populina<\/em>. Ecole Doctorale SIReNa. <\/span>Post-doc at UMR Bioger, EPLM team<\/a> with Isabelle Fudal. Now scientist at Bayer Crop Science.<\/p>\n

\u2022 Daniela Cardenas<\/strong> (visiting PhD student, University of Florida<\/a>, 2021-2022; 6 months), supervisors Liliana Cano & Philippe Rott). Transcriptomics of the sugarcane-Puccinia kuehnii<\/em> interaction.<\/span><\/p>\n

\u2022 Claire Letanneur<\/a><\/strong> (PhD, 2017-2022). Co-advisor. International collaboration with Prof. Hugo Germain<\/a> (Principal supervisor) at Universit\u00e9 du Qu\u00e9bec \u00e0 Trois-Rivi\u00e8re. Host-specific effectors of the poplar rust fungus Melampsora larici-populina<\/em>. Now Director of Innovation and strategic partnerships at Ulysse Biotech<\/a>.<\/p>\n

\u2022 Julie Lintz<\/strong><\/a> (PhD 2020-2023, co-advisor B. Petre). Caract\u00e9risation fonctionnelle et valorisation de peptides de d\u00e9fense multifonctionnels chez les arbres de la famille des Salicac\u00e9es. Ecole Doctorale SIReNa. Now post-doc in S. Kamoun’s lab at TSL, Norwich, UK.<\/span><\/p>\n

\u2022 Ammar Abdalrahem<\/strong><\/a> (PhD 2022-2025, co-advisors P. Frey & F. Halkett). Evolutionary and functional studies of the variability of reproductive modes in the poplar rust fungus, Melampsora larici-populina<\/em>. Ecole Doctorale SIReNa. Now Post-Doc at UMR PHIM (IRD, Montpellier, France).\u00a0<\/span><\/p>\n

\u2022 Emma Corre<\/strong> (PhD 2022-2025, co-advisor Dr. C\u00e9cile Lorrain ETH Zurich). Impact of transposable elements invasion on genomes of Pucciniales (fungi causing rust diseases). Ecole Doctorale SIReNa. Currently looking for a post-doc position on TEs in Europe.<\/span><\/p>\n

\"IMG_8330\"<\/p>\n

My current work focuses on\u2026<\/em><\/strong><\/p>\n

– Analysis of Populus <\/em>and Melampsora <\/em>spp. genomes<\/p>\n

– Rust comparative genomics (in the Melampsoraceae and Pucciniales)<\/p>\n

– Molecular basis of poplar-poplar rust R-Avr interactions<\/p>\n

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\"Mlp-Pop\"<\/p>\n

Melampsora larici-populina <\/em>urediniospore germination<\/p>\n

(\u00a9\u00a0photo, Petre – Pop’art, Seb)<\/p>\n

ACTIVE PROJECTS<\/strong><\/span><\/p>\n

\u2022 Biology of the poplar rust fungus Melampsora larici-populina<\/em> along its life-cycle.<\/span><\/p>\n

My current main project aims at studying the lifecycle of M. larici-populina<\/em> through the lense of transcriptomics in order to unravel potential roles of genes of unknown functions. This project is supported by the French ANR<\/strong> (PRME RustCyclomics<\/strong>). 01\/2026 to 12\/2028. The summary of the project is presented below:<\/p>\n

Rust fungi (Pucciniales) are plant pathogens causing rust diseases in many crops and trees and are a serious threat to agriculture. They are obligate biotrophs and as such, they are particularly hard to study in laboratory conditions. The Pucciniales have unique biological features compared to other fungi, such as very complex life cycles and peculiar genomic profiles. Notably, they alternate on two taxonomically unrelated hosts and form five distinct types of spores successively in a year with a dormancy phase. Compared to other fungi, the rusts display remarkably large genome sizes, a large amount of repeat elements and large gene numbers. Strikingly, about half of these genes are unique to the order Pucciniales with no known function so far. The basis of the RustCyclomics project comes from the concomitant observation of i) a significant amount of unknown genes in a major taxonomical order of plant pathogenic fungi threatening agriculture and ii) the complexity of a life cycle which remains largely unexplored. Our hypothesis is that the use of state-of-the-art omics approaches will help to unravel the genetic programs of Pucciniales. The rust fungus M. larici-populina<\/em> infecting poplar and larch is one of the most advanced model among rust pathosystems. We aim to explore its life cycle through an extensive transcriptomics approach targeting major stages of the cycle, i.e. host infection, asexual\/sexual reproductions and dormancy. Such a dissection will allow identify stage-specific gene expression profiles, as well as putative regulatory elements through interaction network analysis. We aim to combine these findings with protein structure modeling using the most recent AI-based approach. Unravelling genetic programs will pinpoint putative functions of unknown genes allowing to better understand the peculiar biology of rust fungi and provide new targets to combat rust diseases.<\/p>\n

\u2022 Rust genomics<\/p>\n

Several collaborative projects are ongoing in the frame of the Community Science Program<\/em>\u00a0of the US DoE Joint Genome Institute (Walnut Creek, CA, USA):<\/p>\n

> CSP2018 – Rust pangenomics: understanding the diversity and potential impact of rust fungi – a systematic collection of genomes & transcriptomes<\/em><\/a>. International collaborative\u00a0effort targeting 50 rust species across the Pucciniales order. Co-PIs are Sebastien Duplessis (INRA Nancy, France), M.\u00a0Catherine Aime (Purdue Univ, USA), Melania Figueroa (Minnesota Univ, USA), Diane Saunders (JIC, UK), Guus Bakkeren (AAF, Canada), Les J. Szabo (USDA, USA), Robert F. Park (Sydney Univ, Australia), Ralf Vo\u0308gele (Hohenheim Univ, Germany), Benjamin Schwessinger (ANU, Australia), Peter van Esse (TSL, UK), Peter N. Dodds (CSIRO, Australia).<\/p>\n

> CSP2016 – Sequencing a reference genome for Phakopsora pachyrhizi, the fungal pathogen responsible for the Asian Soybean Rust<\/em><\/a>.\u00a0International collaborative\u00a0effort. Co-PIs are\u00a0Sebastien Duplessis (INRA Nancy, France),\u00a0Catherine Sirven (Bayer Cropscience, Lyon, France), Francismar Correa Marcelino-Guimar\u00e3es (EMBRAPA, Brazil), Ralf Voegele (Hohenheim Univ, Germany), Ulrich Schaffrath (Aachen Univ, Germany)<\/p>\n

> CSP2014 – Combined population genomics and transcriptomics to decipher the molecular bases of virulence and host adaptation in the poplar leaf rust fungus Melampsora larici-populina<\/em><\/a>.\u00a0Co-PIs are Sebastien Duplessis (INRA Nancy, France), Pascal Frey (INRA Nancy, France), Fabien Halkett\u00a0(INRA Nancy, France), Stephane De Mita\u00a0\u00a0(INRA Nancy, France).<\/p>\n

In these projects we aim at understanding the biology of rust fungi and more particularly the complexity of their life cycle and their status of obligate biotroph through comparative genomics and transcriptomics including ab-initio and manual annotation of gene and transposable elements families. Most projects are conducted in the frame of international consortia. One of our current focus is comparative genomics of rust fungi in the Melampsoraceae family in collaboration with the JGI and Jana Sperschneider<\/a> and Peter Dodds<\/a> (CSIRO, Australia).<\/p>\n

\u2022 Tree-rust interaction – Study of defense peptides in poplar.<\/p>\n

A rust-induced secreted peptide (RISP) encoding gene was identified in poplar upon infection by the poplar rust fungus Melampsora larici-populina. <\/em>RISP displays dual activities with antifungal and immunomodulatory properties. Our current work focuses on these properties (project coordinated by Benjamin Petre, IAM, Universit\u00e9 de Lorraine).<\/p>\n

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PUBLICATIONS<\/strong><\/span><\/h1>\n

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2026<\/strong><\/span><\/h1>\n

\u2022 CORRE E, MORIN E, SPERSCHNEIDER J, ABDALRAHAM A, PERNACI M, GRIGORIEV IV, FREY P, DUPLESSIS S<\/strong>*, LORRAIN C* (2026<\/strong>). Haplotype-phased assemblies of the two poplar rust fungi species: Melampsora larici-populina and Melampsora allii-populina. Submitted<\/strong>, April 2026. Available as a BioRxiv.<\/em><\/span> *co-corresponding author. <\/span><\/p>\n

2025<\/strong><\/span><\/h1>\n

\u2022 ABDALRAHEM A, NOUS C, DUPLESSIS S,<\/strong> FREY P, STOECKEL S, HALKETT F (2025<\/strong>) Behind the shadow play: Shedding light on the population genetics of partially clonal organisms through clone age distribution. Submitted<\/strong> October 2025. Available as a BioRxiv. doi: 10.1101\/2025.10.03.680262. <\/span><\/em><\/p>\n

\u2022 SPERSCHNEIDER J, CHEN J, ANDERSON C, MORIN E, ZHANG X, LEWIS D, HENNINGSEN E, GRIGORIEV IV, RATHJEN J, JONES DA, DUPLESSIS S<\/strong>, DODDS PN (2025<\/strong>) A chromosome-scale genome assembly of the flax rust fungus reveals the two unusually large effector proteins, AvrM3 and AvrN. Molecular Plant-Microbe Interactions<\/strong><\/em>. doi: 10.1094\/MPMI-04-25-0047-R<\/a>. Available as a BioRxiv. doi: 10.1101\/2025.04.28.651126<\/a>.<\/span><\/span><\/span><\/em><\/p>\n

\u2022 CORRE E, MORIN E, DUPLESSIS S<\/strong>*, LORRAIN C* (2025<\/strong>) Ancestral and recent bursts of transposition shaped the massive genomes of plant pathogenic rust fungi. BMC Genomics<\/em><\/strong>. 26: 627<\/a>, doi: https:\/\/doi.org\/10.1186\/s12864-025-11726-3<\/span><\/span>.<\/span> Available as a BioRxiv. doi: 10.1101\/2025.01.10.632365<\/a><\/span><\/em>. *co-corresponding author.<\/span><\/span><\/span><\/span><\/p>\n

\u2022 DA ROCHA VD, FERREIRA EGC, CASTANHO FM, KUWAHARA MK, GODOY C, MEYER MC, PEDLEY KFP, VOEGELE RT, LIPZEN A, BARRY K, GRIGORIEV IV, LOEHRER M, SCHAFFRATH U, SIRVEN C, DUPLESSIS S<\/strong>, MARCELINO-GUIMARAES FC (2025<\/strong>) The genetic diversity of the soybean rust pathogen Phakopsora pachyrhiz<\/em>i has been driven by two major evolutionary lineages. Fungal Genetics & Biology<\/span> <\/em><\/strong>179: 103990<\/a>. doi: 10.1016\/j.fgb.2025.103990.<\/span>\u00a0Available as a BioRxiv. doi: 10.1101\/2024.10.03.616435v1<\/a>.<\/em><\/span><\/span><\/span><\/p>\n

2024<\/strong><\/span><\/h1>\n

\u2022 LINTZ J, GOTO Y, BENDER K, BCHINI R, DUBRULLE G, CAWSTON E, ZIPFEL C, DUPLESSIS S<\/strong>, PETRE B (2024<\/strong>) Genetically-clustered antifungal phytocytokines and receptor proteins function together to trigger plant immune signaling. Journal of Experimental Botany <\/strong><\/span><\/em>erae297<\/span>. <\/em>doi: 10.1093\/jxb\/erae297<\/a><\/span>.<\/span> <\/em>Available as a BioRxiv:<\/em>\u00a0doi: https:\/\/doi.org\/10.1101\/2023.11.27.568785<\/a>.<\/span><\/p>\n

\u2022 LETANNEUR C, BRISSON A, BISAILLON M, DEVEZE T, PLOURDE MB, SCHATTAT M, DUPLESSIS S<\/strong>, GERMAIN H (2024<\/strong>) Host-specific and homologous pairs of Melampsora larici-populina<\/em> effectors unveil novel Nicotiana benthamiana\u00a0<\/em> stromule induction factors. Molecular Plant-Microbe Interactions<\/strong>. <\/em>37: 277-289<\/a>.<\/span> doi: 10.1094\/MPMI-09-23-0148-FI<\/a>.<\/em><\/span><\/p>\n

2023<\/strong><\/span><\/h1>\n

\u2022 LOUET C, SAUBIN M, ANDRIEUX A, PERSOONS A, GORSE M, PETROWSKI J, FABRE B, DE MITA S, DUPLESSIS S<\/strong>, FREY P, HALKETT F (2023<\/strong>) A point mutation and a large deletion at the candidate avirulence locus AvrMlp7<\/em> in the poplar rust fungus correlate with the poplar RMlp7<\/em> resistance breakdown. Molecular Ecology<\/strong>.\u00a0<\/span><\/em>32:2472\u20132483<\/a><\/span>. Special issue Evolutionary ecology of human-associated microbes.\u00a0<\/em>doi: https:\/\/doi.org\/10.1111\/mec.16294<\/a>.<\/span><\/p>\n

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\u2022 GUPTA YK, MARCELINO-GUIMARAES FC, LORRAIN C, FARMER A, HARIDAS S, FERREIRA EGC, LOPES-CAITAR VS, SANTANA OLIVEIRA L, MORIN E, WIDDISON S, CAMERON C, INOUE Y, THOR K, ROBINSON K, DRULA E, HENRISSAT B, LABUTTI K, RUDSIT BINI AM, PAGET E, SINGAN V, DAUM C, DORME C, VAN HOEK M, JANSSEN A, CHANDAT L, TARRIOTTE Y, RICHARDSON J, ARAUJO MELO BDV, WITTENBERG AHJ, SCHNEIDERS H, PEYRARD S, GOULART ZANARDO L, HOLTMAN VC, COULOMBIER-CHAUVEL F, LINK TI, BALMER D, MULLER AN, KIND S, BOHNERT S, WIRTZ L, CHEN C, YAN M, NG V, GAUTIER P, MEYER MC, VOEGELE RT, LIU Q, GRIGORIEV IV, CONRATH U, BROMMONSCHENKEL SH, LOEHRER M, SCHAFFRATH U, SIRVEN C, SCALLIET G*, DUPLESSIS S*<\/strong>, VAN ESSE HP* (2023<\/strong>) Major proliferation of transposable elements shaped the genome of the soybean rust pathogen Phakopsora pachyrhizi<\/em>. Nature communications <\/em><\/strong>14: 1835<\/a>. *Co-Corresponding author. doi: 10.1038\/s41467-023-37551-4<\/a>. Available as a BioRxiv<\/a>.<\/p>\n

\u2022 GUERILLOT P, SALAMOV A, LOUET C, MORIN E, FREY P, GRIGORIEV IV,\u00a0DUPLESSIS S*<\/strong> (2023<\/strong>) A remarkable expansion of oligopeptide transporter genes in rust fungi (Pucciniales) suggests a specialization in nutrients acquisition for obligate biotrophy. Phytopathology<\/strong><\/em> 113: 252-264<\/a>. doi: 10.1094\/PHYTO-04-22-0128-R<\/a>. Available as a BioRxiv:<\/em> (10.1101\/2022.04.20.488971v1)<\/em><\/a>. *Corresponding author. <\/span><\/p>\n

2022<\/strong><\/span><\/h1>\n

\u2022 DUPLESSIS S<\/strong> (2022<\/strong>) Exploring genomic determinants of host specialization in Botrytis cinerea<\/em>. Recommendation for article \u2018Botrytis cinerea strains infecting grapevine and tomato display contrasted repertoires of accessory chromosomes, transposons and small RNAs\u2019 by Simon et al<\/a>.<\/em> doi:10.24072\/pci.genomics.100023. Peer Community in Genomics<\/strong><\/em>, 100023<\/a>.<\/p>\n

\u2022 LOUET C,\u00a0DUPLESSIS S<\/strong>, FREY P, PETRE B (2022<\/strong>) A survey of highly influential studies on plant pathogen effectors during the last two decades (2000-2020). Frontiers in Plant Science <\/strong><\/em>13: 920281. doi: 10.3389\/fpls.2022.920281<\/a>. Available as a HAL archive (hal-03386375<\/a>)<\/em>. Part of the research topic Secretomics: More Secrets to Unravel on Plant-Fungus Interactions, Volume II<\/em><\/a>.<\/p>\n

\u2022 PETRE B*, DUPLESSIS<\/strong> S* <\/strong>(2022<\/strong>) A decade after the first Pucciniales genomes : a bibliometric snapshot of (post) genomics studies in three model rust fungi.Frontiers in Microbiology <\/strong><\/em>13: 989580. doi: 10.3389\/fmicb.2022.989580<\/a>.<\/em> Mini-review in Research Topic Celebrating 20 Years of Microbial Plant Pathogen Genomes<\/em>. Available as a HAL archive<\/a> hal-03719656. <\/em>*<\/em>Co-corresponding author.<\/p>\n

\u2022 LINTZ J, DUBRULLE G, CAWSTON E, DUPLESSIS S<\/strong>, PETRE B (2022<\/strong>) A short review of anti-rust fungi peptides: diversity, bioassays, and unknown mode of actions. Frontiers in Agronomy <\/strong><\/em>4: 966211. doi: 10.3389\/fagro.2022.966211<\/a>. <\/em>Mini-review in Research Topic\u00a0Advances in Novel Natural Product Pesticides.<\/em><\/p>\n

\u2022 PETRE B, LOUET C, LINTZ J, DUPLESSIS S<\/strong>\u00a0(2022<\/strong>) 2000-2019: twenty years of highly influential publications in plant immunity. Molecular Plant-Microbe Interactions <\/strong><\/em>9: 748-754. doi: 10.1094\/MPMI-05-22-0112-CR<\/a>. Available as a HAL<\/a> archive (hal-03325099v2).<\/em><\/p>\n

\u2022 LOUET C, BLOT C, SHELEST E, GUERILLOT P, SALAMOV A, ZANNINI F, PETROWSKI J, GRIGORIEV IV, FREY P, DUPLESSIS S* <\/strong>(2022<\/strong>) Annotation survey and life cycle transcriptomics of transcription factors in rust fungi (Pucciniales) identify a possible role for cold shock proteins in dormancy exit. Fungal Genetics & Biology <\/strong><\/em>1061: 103698<\/a>. <\/em>Available as a BioRxiv (10.1101\/2021.10.19.465044v1<\/a>). *Corresponding author. <\/span><\/p>\n

\u2022 TAO S, ZHANG Y, QU L, TIAN C, DUPLESSIS S<\/strong>, ZHANG N (2022<\/strong>) Elevated ozone concentration and nitrogen addition increase poplar rust severity by shifting the phyllosphere microbial community. Journal of Fungi <\/i><\/strong>8: 523.\u00a0doi: 10.3390\/jof8050523<\/a>.<\/em> Available as a BioRxiv (10.1101\/2021.12.23.474070v1<\/a>)<\/em><\/p>\n

\u2022 DUPLESSIS S<\/strong> (2022<\/strong>) Comparative genomics in the chestnut blight fungus Cryphonectria parasitica<\/em> reveals large chromosomal rearrangements and a stable genome organization. Recommendation for article ‘Chromosomal rearrangements with stable repertoires of genes and transposable elements in an invasive forest-pathogenic fungus’ by Demen\u00e9 et al<\/a>. <\/em>doi:10.24072\/pci.genomics.100013. Peer Community in Genomics<\/strong><\/em>, 100013<\/a>.<\/p>\n

\u2022 PERSOONS A, MAUPETIT A, LOUET C, ANDRIEUX A, LIPZEN A, BARRY KW, NA H, ADAM C, GRIGORIEV I, SEGURA V, DUPLESSIS S<\/strong>, FREY P, HALKETT F, DE MITA S (2022<\/strong>). Genomic signatures of a major adaptive event in the pathogenic fungus Melampsora larici-populina<\/em>. Genome Biology and Evolution<\/strong>. <\/em>14: evab279.<\/a> doi: 10.1093\/gbe\/evab279. Available as a BioRxiv, doi: 10.1101\/2021.04.09.439223v1<\/a><\/span>.<\/em><\/p>\n

2021<\/strong><\/span><\/h1>\n

\u2022 GUERILLOT P, MORIN E, KOHLER A, LOUET C, DUPLESSIS S*<\/strong>\u00a0(2021<\/strong>) A comprehensive collection of transcriptome data to support life cycle analysis of the poplar rust fungus Melampsora larici-populina<\/em>. Brief research data report. 4p. Available as a BioRxiv<\/strong><\/em>. *Corresponding author. doi: 10.1101\/2021.07.25.453710<\/em><\/a>. Related datasets available at FigShare doi: 10.6084\/m9.figshare.15048822.v1<\/a>.<\/p>\n

\u2022 WANG X, ZHUANG R, ZHAI T, ZHANG X, TANG C, ZHAO H, CHENG Y, XU Q, WANG J, DUPLESSIS S<\/strong>, KANG Z, WANG X (2021<\/strong>) Two stripe rust effectors suppress wheat resistance by preventing import of a host Fe-S protein into chloroplasts. Plant Physiology<\/em><\/strong>. 187: 2530-2543<\/a>.<\/p>\n

\u2022 DUPLESSIS S<\/strong>, LORRAIN C, PETRE B, FIGUEROA M, DODDS PN, AIME MC (2021<\/strong>) Host adaptation and virulence in heteroecious rust fungi. Annual Review of Phytopathology<\/em><\/strong>. 59: 403-422<\/a>. Corresponding author. doi: 10.1146\/annurev-phyto-020620-121149<\/span><\/p>\n

\u2022 LORRAIN C, OGGENFUSS U, CROLL D, DUPLESSIS S<\/strong>, STUKENBROCK EH (2021<\/strong>)\u00a0 Transposable elements in fungi: coevolution with the host genome shapes genome architecture, plasticity and adaptation. In:<\/em> Encyclopedia of Mycology<\/em><\/strong> Vol.1: 142-155<\/a>. 10.1016\/B978-0-12-819990-9.00042-1<\/a><\/span><\/p>\n

2020<\/strong><\/span><\/h1>\n

\u2022 PETRE B, LORRAIN C, STUKENBROCK EH, DUPLESSIS S<\/strong>\u00a0(2020<\/strong>) Host-specialized transcriptome of plant associated organisms. Current Opinion in Plant Biology<\/strong>.<\/em> 56: 81-88.<\/a> Corresponding author. doi: 10.1016\/j.pbi.2020.04.007<\/span><\/p>\n

\u2022 TAO SQ, AUER L, MORIN E, LIANG Y-M, DUPLESSIS S <\/strong>(2020<\/strong>) Transcriptome analysis of apple leaves infected by the rust fungus Gymnosporangium yamadae<\/em> at two sporulation stages. Molecular Plant-Microbe Interactions<\/em><\/strong>\u00a0<\/strong><\/em>doi: 10.1094\/MPMI-07-19-0208-R<\/a>. Co-corresponding author. Available as a bioRxiv, doi: https:\/\/doi.org\/10.1101\/717058<\/a>.<\/em><\/span><\/p>\n

2019<\/strong><\/span><\/h1>\n

\u2022 DEGUILLEN K, LORRAIN C, TSAN P, BARTHE P, PETRE B, SAVELEVA N, ROUHIER N, DUPLESSIS S<\/strong>, PADILLA A, HECKER A (2019<\/strong>) Structural genomic applied on the rust fungus Melampsora larici-populina<\/em> reveals two candidate effector proteins adopting cystine-knot and nuclear transport factor 2-like protein folds. Scientific reports <\/em><\/strong>9:18084<\/a>. Available as a bioRxiv, doi: https:\/\/doi.org\/10.1101\/727933<\/a>. <\/em><\/span><\/p>\n

\u2022 TAO SQ, CAO B, MORIN E, LIANG Y-M, DUPLESSIS S <\/strong>(2019<\/strong>)\u00a0Comparative transcriptomics of Gymnosporangium<\/em> spp. teliospores reveals a conserved genetic program at this specific stage of the rust fungal life cycle.\u00a0BMC Genomics<\/strong><\/em> 20:723<\/a>. Co-corresponding author.<\/span><\/p>\n

\u2022 LORRAIN C, GONCALVES DOS SANTOS KC, GERMAIN H, HECKER A, DUPLESSIS S<\/strong>\u00a0(2019<\/strong>) Advances in understanding obligate biotrophy in rust fungi. Tansley review, New Phytologist<\/em><\/strong>.\u00a0doi:\u00a010.1111\/nph.15641<\/a>. Corresponding author.<\/span><\/p>\n

2018<\/strong><\/span><\/h1>\n

\u2022\u00a0AHMED B, GONCALVES DOS SANTOS KC, SANCHEZ IB, PETRE B, LORRAIN C,\u00a0DUPLESSIS S<\/strong>, DESGAGNE-Penix I, GERMAIN H\u00a0(2018<\/strong>) A rust fungal effector binds plant DNA and modulates transcription.\u00a0Scientific reports<\/em><\/strong>, 8: 14718<\/a>.<\/span><\/p>\n

\u2022\u00a0PLOMION C, AURY JM, AMSELEM J, LEROY T, MURAT F, DUPLESSIS S<\/strong>, FAYE S, FRANCILLONNE N, LABADIE K,LE PROVOST G, LESUR I, BARTHOLOME\u0301 J, FAIVRE-RAMPANT P, KOHLER A, LEPLE\u0301 J-C, CHANTRET N, CHEN J, DIE\u0301VART A, ALAEITABAR I, BARBE V, BELSER C, BERGE\u0300S H, BODE\u0301NE\u0300S C, BOGEAT-TRIBOULOT MB, BOUFFAUD M-L, BRACHI B, COHEN D, COULOUX A, DA SILVA C, DOSSAT C, EHRENMANN F, GASPIN C, GRIMA-PETTENATI J, GUICHOUX E HECKER A, HERRMANN S, HUGUENEY P, HUMMEL I, KLOPP C, LALANNE C, LASCOUX M, LASSERRE E, LEMAINQUE A, DESPREZ-LOUSTAU M-L, LUYTEN I, MADOUI MA, MANGENOT S, MARCHAL C, MAUMUS F, MERCIER J, MICHOTEY C, PANAUD O, PICAULT N, ROUHIER N, RUE\u0301 O, RUSTENHOLZ C, SALIN F, SOLER M, TARKKA M, VELT A, ZANNE A, MARTIN F, WINCKER P, QUESNEVILLE H, KREMER A, SALSE J\u00a0(2018<\/strong>) Oak genome reveals facets of long lifespan. Nature Plants<\/strong><\/em>, doi:\u00a010.1038\/s41477-018-0172-3<\/a>.<\/span><\/p>\n

\u2022\u00a0ZENG Z, SUN H, VAINIO AJ, RAFFAELLO T, KOVALCHUK A, MORIN E,\u00a0DUPLESSIS S<\/strong>, ASIEGBU FO\u00a0(2018<\/strong>) Intraspecific comparative genomics\u00a0of isolates of the Norway spruce pathogen (Heterobasidion parviporum) and identification of its potential virulence factors. Research article,\u00a0BMC Genomics<\/strong><\/em>,\u00a019: 220<\/a>.<\/em><\/span><\/p>\n

\u2022 LORRAIN C, PETRE B, DUPLESSIS S<\/strong> (2018<\/strong>) Show me the way: rust effector targets in heterologous plant systems. Current Opinion in Microbiology<\/strong><\/em>, 46:19-25<\/a>. Corresponding author.<\/span><\/p>\n

<\/a><\/p>\n

\u2022\u00a0LORRAIN C, MARCHAL C, HACQUARD S, DELARUELLE C, PETROWSKI J, PETRE B, HECKER A, FREY P,\u00a0DUPLESSIS S<\/strong> (2018<\/strong>) The rust fungus\u00a0Melampsora larici-populina<\/em> expresses a conserved genetic program and distinct sets of secreted protein genes during infection of its two host plants, larch and poplar. Molecular Plant-Microbe Interactions<\/em><\/strong>.<\/strong> <\/em>doi: 10.1094\/MPMI-12-17-0319-R<\/a>.<\/span>\u00a0July issue cover.<\/em>\u00a0Corresponding author.\u00a0<\/span><\/p>\n

Early version\u00a0available at<\/span>\u00a0BioRxiv<\/a>.<\/em><\/p>\n

\u2022 GERMAIN H, JOLY DL, MIREAULT C, PLOURDE MB, LETANNEUR C, STEWART D, MORENCY M-J, PETRE B,\u00a0DUPLESSIS S<\/strong>, SEGUIN A (2018<\/strong>) Infection assays in\u00a0Arabidopsis<\/em> reveal candidate effectors from the poplar rust fungus that promote susceptibility to bacteria and oomycete pathogens. Molecular Plant Pathology<\/strong><\/em>. 19: 191-200. doi: 10.1111\/mpp.12514<\/a>.<\/span><\/p>\n

2017<\/strong><\/span><\/h1>\n

\u2022 AIME MC, McTAGGART AR, MONDO SJ, DUPLESSIS S<\/strong>\u00a0(2017<\/strong>) Phylogenetics and phylogenomics of rust fungi. In: Fungal phylogenetics and phylogenomics. Townsend JP & Wang Z, Eds. Elsevier Academic Press, Cambridge, MA, USA. Advances in Genetics<\/strong><\/em> Vol 100: 267-307<\/a>. Corresponding author.<\/span><\/p>\n

\u2022 SPERSCHNEIDER\u00a0J, TAYLOR J, DODDS PN,\u00a0DUPLESSIS S<\/strong>\u00a0(2017<\/strong>) Computational methods for predicting effectors in rust pathogens. Wheat Rust Disease – Methods and Protocols.\u00a0Methods in Molecular Biology<\/strong><\/em>. Springer, 2017, pp73-83<\/a>.<\/span><\/p>\n

2016<\/strong><\/span><\/p>\n

\u2022<\/span> DUPLESSIS\u00a0S<\/strong>, BAKKEREN\u00a0G, JOLY, DL, eds. (2016<\/strong>) Genomics Research on Non-model Plant Pathogens: Delivering Novel Insights into Rust Fungus Biology.\u00a0Lausanne: Frontiers Media<\/strong><\/em>. doi: 10.3389\/978-2-88919-814-6<\/a>.\u00a0Collective Ebook.\u00a0Co-editor.<\/span><\/p>\n

\u2022 BAKKEREN G, JOLY\u00a0DL,\u00a0DUPLESSIS\u00a0S<\/strong> (2016<\/strong>) Editorial: Genomics Research on Non-model Plant Pathogens: Delivering Novel Insights into Rust Fungus Biology. Frontiers in Plant Science<\/strong><\/em>\u00a07:216. doi: 10.3389\/fpls.2016.00216<\/a>.\u00a0Co-corresponding author.<\/span><\/p>\n

\u2022\u00a0PETRE B, SAUNDERS DGO, SKLENAR J, LORRAIN C, KRASILEVA KV, WIN J, DUPLESSIS S<\/strong>, KAMOUN S (2016<\/strong>) In planta expression screens of candidate effector proteins from the wheat yellow rust fungus reveal processing bodies as a pathogen-targeted plant cell compartment. PLoS ONE<\/strong>,\u00a011(2):e0149035<\/a>. <\/em>Pre-print @ bioRxiv<\/a>.<\/span><\/p>\n

\u2022 PETRE B, HECKER A, GERMAIN H, TSAN P, SKLENAR J, PELLETIER G, SEGUIN A,\u00a0DUPLESSIS S<\/strong>, ROUHIER N (2016<\/strong>) The poplar rust-induced secreted protein (RISP) inhibits the growth of the leaf rust pathogen Melampsora larici-populina<\/em> and triggers cell culture alkalinisation.\u00a0Frontiers in Plant\u00a0Science <\/strong>7:97\u00a0<\/strong><\/em>doi: 10.3389\/fpls.2016.00097<\/a>.\u00a0<\/em>Co-Corresponding author.<\/span><\/p>\n

\u2022\u00a0PLOMION C, BASTIEN C, BOGEAT-TRIBOULOT M-B, BOUFFIER L, DEJARDIN A, DUPLESSIS S<\/strong>, FADY B, HEUERTZ M, LE GAC A-L, LE PROVOST G, LEGUE V, LELU-WALTER M-A, LEPLE J-C, MAURY S, MOREL A, ODDOU-MURATORIO S, PILATE G, SANCHEZ L, SCOTTI I, SCOTTI-SAINTAGNE C, SEGURA V, TRONTIN J-F, VACHER C (2016<\/strong>) Forest tree genomics: 10 achievements from the past 10 years and future prospects. Annals of Forest Science<\/strong><\/em>, 73:77-103 doi: 10.1007\/s13595-015-0488-3<\/a>.<\/span><\/p>\n

\u2022\u00a0PLOMION C, AURY J-M, AMSELEM J, ALAEITABAR T, BARBE V, BELSER C, BERGES H, BODENES-BREZARD C, BOUDET N, BOURY C, CANAGUIER A, COULOUX A, DA SILVA C, DUPLESSIS S<\/strong>, EHRENMANN F, ESTRADA-MAIREY B, FOUTEAU S, FRANCILLONNE N, GASPIN C, GUICHARD C, KLOPP C, LABADIE K, LALANNE C, LE CLAINCHE I, LEPL\u00c9 JC, LE PROVOST G, LEROY T, LESUR-KUPIN I, MARTIN F, MERCIER J, MICHOTEY C, MURAT F, SALIN F, STEINBACH D, FAIVRE-RAMPANT P, WINCKER P, SALSE J, QUESNEVILLE H, KREMER A (2016<\/strong>) Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies. Molecular Ecology Resources<\/strong><\/em>\u00a016:254-265<\/a>.<\/span><\/p>\n

2015<\/strong><\/span><\/h1>\n

\u2022\u00a0LORRAIN C, HECKER A, DUPLESSIS S<\/strong> (2015<\/strong>) Effector-mining in the poplar rust fungus Melampsora larici-populina<\/em>\u00a0secretome. Mini-review, Frontiers in Plant Science<\/strong><\/em> 6:1051<\/a>. Corresponding author.<\/span><\/p>\n

\u2022\u00a0SILVA DN, DUPLESSIS S<\/strong>, TALHINHAS P, AZINHEIRA H, PAULO OS, BATISTA D (2015<\/strong>) Genomic Patterns of Positive Selection at the Origin of Rust Fungi. PLoS One<\/strong><\/em> 10:e0143959<\/a>.<\/span><\/p>\n

\u2022\u00a0PETRE B, LORRAIN C, SAUNDERS DG, WIN J, SKLENAR J, DUPLESSIS S<\/strong>, KAMOUN S (2015<\/strong>) Rust fungal effectors mimic host transit peptides to translocate into chloroplasts. Cellular Microbiology<\/strong><\/em>\u00a018:453-465\u00a0doi: 10.1111\/cmi.12530<\/a>.<\/span><\/p>\n

\u2022 PERLIN MH, AMSELEM J, FONTANILLAS E, TOH SS, CHEN Z, GOLDBERG J, DUPLESSIS S<\/strong>, HENRISSAT B, YOUNG S, ZENG Q, AGUILETA G, PETIT E, BADOUIN H, ANDREWS J, RAZEEQ D, GABALD\u00d3N T, QUESNEVILLE H, GIRAUD T, HOOD ME, SCHULTZ DJ, CUOMO CA (2015<\/strong>) Sex and parasites: genomic and transcriptomic analysis of Microbotryum lychnidis-dioicae<\/em>, the biotrophic and plant-castrating anther smut fungus. BMC Genomics<\/strong><\/em> 16: 461<\/a>.<\/span><\/p>\n

\u2022 PETRE B, SAUNDERS DGO, SKLENAR J, LORRAIN C, WIN J, DUPLESSIS S<\/strong>, KAMOUN S\u00a0(2015<\/strong>) Candidate effector proteins of the rust pathogen Melampsora larici-populina<\/em> target diverse plant cell compartments.\u00a0Molecular\u00a0Plant-Microbe Interactions<\/strong>.<\/em> 28:689-700<\/a>.<\/p>\n

\u2022\u00a0LORRAIN C, MORIN E, PERSOONS A, HECKER A, DUPLESSIS S<\/strong> (2015<\/strong>) Les effecteurs de Melampsora larici-populina<\/em>. Actes du s\u00e9minaire 2015 de l’Ecole Doctorale RP2E, Nancy, France (ISBN 2-9518564-8-2), 8 pages.<\/em><\/span><\/p>\n

2014<\/strong><\/span><\/h1>\n

\u2022\u00a0DUPLESSIS S<\/strong>, BAKKEREN G, HAMELIN R (2014<\/strong>) Advancing knowledge on biology of rust fungi through genomics. Advances in Botanical Research<\/strong><\/em>\u00a070:173-209<\/a>.<\/span><\/p>\n

\u2022\u00a0PEGEOT H, KOH CS, PETRE B, MATHIOT S, DUPLESSIS S<\/strong>, HECKER A, DIDIERJEAN C, ROUHIER N (2014<\/strong>) The poplar Phi class glutathione transferase: expression, activity and structure of GSTF1. Frontiers in Plant Science<\/strong><\/em>\u00a05:712<\/a>.<\/span><\/p>\n

\u2022\u00a0PERNACI M, DE MITA S, ANDRIEUX A, PETROWSKI J, HALKETT F, DUPLESSIS S<\/strong>, FREY P (2014<\/strong>) Genome-wide patterns of segregation and linkage disequilibrium: the construction of a linkage genetic map of the poplar rust fungus Melampsora larici-populina<\/em>. Frontiers in Plant Science<\/strong><\/em>\u00a05:454<\/a>.<\/span><\/p>\n

\u2022 PERSOONS A, MORIN E, DELARUELLE C, PAYEN T, HALKETT F, FREY P, DE MITA S, DUPLESSIS S<\/strong> (2014<\/strong>) Patterns of genomic variation in the poplar rust fungus Melampsora larici-populina<\/em> identify pathogenesis-related factors. Frontiers in Plant Science<\/strong><\/em>, 5:450.<\/a> Corresponding author.<\/span><\/p>\n

\u2022 PETRE B, JOLY DL, DUPLESSIS<\/strong> S<\/strong> (2014<\/strong>) Effector proteins of rust fungi. Mini-review,\u00a0Frontiers in Plant Science<\/em><\/strong>\u00a05: 416<\/a>. Corresponding author.<\/span><\/p>\n

\u2022\u00a0LOEHRER M, VOGEL A, HUETTEL B, REINHARDT R, BENES V, DUPLESSIS S<\/strong>, USADEL, B, SCHAFFRATH U (2014<\/strong>) On the current status of Phakopsora pachyrhizi<\/em> genome sequencing. Perspective,\u00a0Frontiers in Plant Science<\/strong><\/em> 5:377<\/a>.<\/span><\/p>\n

\u2022 PETRE B, HACQUARD S, DUPLESSIS S<\/strong>, ROUHIER N (2014<\/strong>) Poplar Leucine-Rich Repeat Receptor-Like Protein (LRR-RLP) genes cluster with genes coding putative endogenous ligands. Frontiers in Plant\u00a0Science<\/strong><\/em>\u00a05:111.<\/a>\u00a0<\/em>Co-Corresponding author.<\/span><\/p>\n

\u2022 TALHINAS P,\u00a0AZINHEIRA HG, VIEIRA B, LOUREIRO A, TAVARES S, BATISTA D, MORIN E, PETITOT A-S, PAULO OS, POULAIN J, DA SILVA C, DUPLESSIS S<\/strong>, SILVA MdC, FERNANDEZ D (2014<\/strong>) Overview of the functional virulent genome of the coffee leaf rust pathogen Hemileia vastatrix<\/em> with an emphasis on early stages of infection. Frontiers in Plant Science<\/strong><\/em> 5:88<\/a>.<\/span><\/p>\n

2013<\/strong><\/span><\/h1>\n

\u2022 HACQUARD S, DELARUELLE C, FREY P, TISSERANT E, KOHLER A, DUPLESSIS S<\/strong> (2013<\/strong>) Transcriptome analysis of poplar rust telia reveals overwintering adaptation and tightly coordinated karyogamy and meiosis processes. Frontiers in Plant\u00a0Science<\/strong>\u00a0<\/em>4: 456.<\/a> Corresponding author.<\/span><\/span><\/p>\n

\u2022\u00a0DUPLESSIS S<\/strong>, SPANU PD, SCHIRAWSKI J (2013<\/strong>) Biotrophic fungi (powdery mildews, Rusts and Smuts). In\u00a0Ecological genomics of the fungi, Plant-interacting fungi section<\/em>. Martin F (ed), Wiley-Blackwell. 149-168<\/em>.<\/span><\/p>\n

\u2022 FERNANDEZ D, TALHINHAS P, DUPLESSIS S<\/strong> (2013<\/strong>) Rust fungi achievements and future challenges on genomics and host-parasite interactions. The Mycota vol. XI, Agricultural applications <\/em>2nd edition, Kempken F ed, Springer. 315-342.<\/span><\/p>\n

\u2022 PERSOONS A, HALKETT F, DUPLESSIS S<\/strong>, DE MITA S (2013<\/strong>) La g\u00e9nomique des populations : \u00e9volution des m\u00e9thodes de d\u00e9tection de la s\u00e9lection. Actes du s\u00e9minaire 2013 de l’Ecole Doctorale RP2E, Nancy, France (ISBN 2-9518564-8-2). 8 pages.<\/em><\/span><\/span><\/p>\n

<\/h2>\n

2012<\/strong><\/span><\/h1>\n

\u2022 <\/span>PETRE B, MORIN E, TISSERANT E, HACQUARD S, DA SILVA C, POULAIN J, DELARUELLE C, ROUHIER N, MARTIN F, KOHLER A, DUPLESSIS S<\/strong> (2012<\/strong>) RNA-Seq of early-infected poplar leaves by the rust pathogen Melampsora larici-populina<\/em> uncovers PtSultr3;5<\/em>, a fungal-induced host sulfate transporter. PLoS ONE<\/em> <\/strong>7(8): e44408<\/a>. Corresponding author.<\/p>\n

\u2022 <\/span>HAMEL L-P, NICOLE M-C, DUPLESSIS S<\/strong>, ELLIS BE (2012<\/strong>) MAPK signaling in plant-interacting fungi: distinct messages from conserved messengers. The <\/strong><\/em>Plant Cell<\/strong><\/em>, 24<\/strong>:1327-1351<\/a>.<\/span><\/p>\n

\u2022 <\/span>OLSON A, AERTS A, ASIEGBU F, BELBAHRI L, BOUZID O, BROBERG A, CANBACK B, COUTINHO PM, CULLEN D, DALMAN K, DEFLORIO G, VAN DIEPEN LTA, DUNAND C, DUPLESSIS S<\/strong>, DURLING M, GONTHIER P, GRIMWOOD J, GUNNAR FOSSDAL C, HANSSON D, HENRISSAT B, HIETALA A, HIMMELSTRAND K, HOFFMEISTER D, HOGBERG N, JAMES TY, KARLSSON M, KOHLER A, KUES U, LEE Y-H, LIN Y-C, LIND M, LINDQUIST E, LOMBARD V, LUCAS S, LUNDEN K, MORIN E, MURAT C, PARK J, RAFFAELLO T, ROUZE P, SALAMOV A, SCHMUTZ J, SOLHEIM H, STAHLBERG J, VELEZ H, DE VRIES RP, WIEBENGA A, WOODWARD S, YAKOVLEV I, GARBELOTTO M, MARTIN F, GRIGORIEV IV, STENLID J (2012<\/strong>) Insight into trade-off between wood decay and parasitism from the genome of a fungal forest pathogen. The New Phytologist<\/strong>, <\/em>194<\/strong>:1001-1013<\/a><\/em>.<\/span><\/p>\n

\n
\n
\"cover\"\u2022 <\/span>HACQUARD S, JOLY DJ, LIN Y-C, TISSERANT E, FEAU N, DELARUELLE C, LEGUE V, KOHLER A, TANGUAY P, PETRE B, FREY P, VAN DE PEER Y, ROUZE P, MARTIN F, HAMELIN RC,\u00a0DUPLESSIS S <\/strong>(2012<\/strong>)A comprehensive analysis of genes encoding small secreted proteins identifies candidate effectors in\u00a0Melampsora larici-populina<\/em> (poplar leaf rust).\u00a0Molecular Plant-Microbe Interactions<\/strong><\/em>, 25<\/strong>:279-293<\/a>. Corresponding author. <\/span><\/div>\n
MPMI march issue cover<\/a>.<\/span><\/div>\n
\u00a0<\/span><\/div>\n
\n

\u2022 <\/span>FERNANDEZ D, TISSERANT E, TALHINHAS P, AZINHEIRA H, VIEIRA A, PETITOT A-S, LOUREIRO A, SILVA MdC, POULAIN J, DA SILVA C, DUPLESSIS S (<\/span>2012)<\/span><\/strong> 454-pyrosequencing of Coffea arabica <\/em>leaves infected by the rust fungus Hemileia vastatrix <\/em>reveals in planta expressed pathogen-secreted proteins and plant functions expressed in a late compatible plant-rust interaction. Molecular Plant Pathology<\/strong>, 13<\/strong>:17-37<\/a><\/span><\/span><\/em>. Corresponding author.<\/span><\/p>\n<\/div>\n

\u2022 <\/span>DUPLESSIS S<\/span><\/strong>, JOLY DJ, DODDS PN (2012<\/strong>) Rust effectors.Chapter 7 <\/span>In Effectors in Plant-Microbes Interactions<\/em>, Martin F and Kamoun S (eds), Wiley-Blackwell<\/a><\/em><\/span>,<\/a> pp-155-193<\/a>.<\/span><\/span><\/span><\/div>\n
\u00a0<\/span><\/span><\/span><\/div>\n
\u2022 <\/span>VIEIRA A, TALHINHAS P, LOUREIRO A, THURICH J,\u00a0DUPLESSIS S<\/strong>, FERNANDEZ D, SILVA MdC, PAULO OS, AZINHEIRA HG (2012<\/strong>) Expression profiling of genes involved in the biotrophic colonisation of\u00a0Coffea arabica<\/em> by\u00a0Hemileia vastatrix<\/em>.\u00a0European Journal of Plant Pathology<\/strong><\/em>,\u00a0133<\/strong>:261-277<\/a>.<\/span><\/div>\n
\n

\u2022 SILVA DN, VIEIRA A, TALHINHAS P, AZINHEIRA HG, SILVA MDC, FERNANDEZ D, DUPLESSIS S<\/strong>, PAULO OS, BATISTA D (2012<\/strong>) Phylogenetic analysis of Hemileia vastatrix<\/em> and related taxa using a genome-scale approach. In Proccedings of the 24th Conference of the Association for Science and Information on Coffee<\/em>. In press.<\/p>\n

\u2022 DOWKIW A, JORGE V, VILLAR M, VOISIN E, GUERIN V, FAIVRE-RAMPANT P, BRESSON A, BITTON F, DUPLESSIS S<\/strong>, FREY P, PETRE B, GUINET C, XHAARD C, FABRE B, HALKETT F, PLOMION C, LALANNE C, BASTIEN C (2012<\/strong>) Breeding poplars with durable resistance to Melampsora larici-populina<\/em> leaf rust: a multidisciplinary approach to understand and delay pathogen adaptation. Extended abstract in the Proceedings of the 4th International Workshop on Genetics of Host-Parasite Interactions in Forestry<\/a><\/em>, Oregon, USA<\/em>, General technical report PSW-GTR-240 Forest Service USDA, Eds. Pp-31-38<\/em>.<\/p>\n<\/div>\n

<\/div>\n

2011<\/strong><\/span><\/h1>\n<\/div>\n<\/div>\n
\n
\n

\u00a0\u2022 <\/span>HACQUARD S, PETRE B, FREY P, HECKER A, ROUHIER N, <\/span>DUPLESSIS S\u00a0(<\/span>2011)<\/span><\/span><\/strong> The poplar-poplar rust interaction: insights from genomics and transcriptomics. <\/span>Journal of Pathogens<\/strong>. (edited by B Tyler<\/em><\/span><\/span>). <\/em>Vol. 2011,\u00a0Article ID 716041, 11 pages (doi:10.4061\/2011\/716041<\/a>). <\/span>Corresponding author.<\/span><\/span><\/p>\n<\/div>\n

\n
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\u2022 <\/span>DUPLESSIS S<\/span><\/strong>, HACQUARD S, DELARUELLE C, TISSERANT E, FREY P, MARTIN F, KOHLER A (<\/span>2011<\/span><\/strong>) <\/span><\/span>Melampsora larici-populina<\/span><\/em> transcript profiling during germination and time-course infection of poplar leaves reveals dynamic expression patterns associated with virulence and biotrophy. <\/span>Molecular Plant-Microbe Interactions,\u00a024<\/a><\/span>:808-818<\/a><\/span><\/span><\/span><\/em><\/strong><\/span>.\u00a0Co-1st author. Corresponding author.<\/span><\/span><\/div>\n<\/div>\n
<\/div>\n

\u2022 <\/span>L’HARIDON F, AIME S, DUPLESSIS S<\/strong>, ALABOUVETTE C, STEINBERG C, OLIVAIN C (2011<\/strong>) Isolation of differentially expressed genes during interactions between tomato cells and a protective or a non-protective strain of Fusarium oxysporum. Physiological and Molecular Plant Pathology<\/em><\/strong>,<\/span> 76<\/strong>:9-19<\/a>.<\/span><\/p>\n

\u2022 <\/span>VIEIRA A, TALHINHAS P, LOUREIRO A,\u00a0DUPLESSIS S<\/strong>, FERNANDEZ D, SILVA MdC, PAULO OS, AZINHEIRA HG (2011<\/strong>) Validation of real time quantitative PCR reference genes for in planta expression studies in Hemileia vastatrix, the causal agent of coffee leaf rust. <\/span>Fungal Biology<\/span><\/strong>,<\/a><\/em> 115<\/strong>:891-901<\/a>.<\/a><\/span><\/p>\n

\n

\u2022 <\/span>DUPLESSIS S<\/span><\/strong>, CUOMO CA, LIN Y-C, AERTS A, TISSERANT E, VENEAULT-FOURREY C, JOLY DL, HACQUARD S, AMSELEM J, CANTAREL B, CHIU R, COUTINHO P, FEAU N, FIELD M, FREY P, GELHAYE E, GOLDBERG J, GRABHERR M, KODIRA C, KOHLER A, KUES U, LINDQUIST EA, LUCAS S, MAGO R, MAUCELI E, MORIN E, MURAT C, PANGILINAN JL, PARK R, PEARSON M, QUESNEVILLE H, ROUHIER N, SAKTHIKUMAR S, SCHMUTZ J, SELLES B, SHAPIRO H, TANGUAY P, TUSKAN GA, HENRISSAT B,\u00a0VAN DE PEER Y, ROUZE P, ELLIS JG, DODDS PN, SCHEIN JE, ZHONG S, HAMELIN RC, GRIGORIEV IV, SZABO LJ, MARTIN F (<\/span>2011<\/span><\/strong>) Obligate biotrophy features unraveled by the genomic analysis of rust fungi<\/span><\/span>. Proceedings of the National Academy of Science USA<\/strong><\/em>, 108<\/strong>:9166-9171<\/span><\/span><\/span>. <\/a>Open Access.<\/a> <\/cite> Co-1st author. Co-corresponding author.<\/span><\/span><\/span><\/span><\/span><\/p>\n<\/div>\n<\/div>\n<\/div>\n

Commentary by J.M. McDowell<\/a>.\u00a0INRA Press release\u00a0(english<\/a>, french<\/a>), JGI Press release<\/a>, Broad Institute Press release<\/a>, USDA ARS Press release<\/a>.<\/div>\n

\u2022 <\/span>PETRE B, MAJOR I, ROUHIER N, <\/span>DUPLESSIS S<\/span> (<\/span><\/span>2011<\/span>)<\/span><\/span><\/span><\/strong>Genome-wide analysis of eukaryote thaumatin-like proteins (TLPs) with an emphasis on poplar. <\/span><\/span>BMC Plant Biology<\/span><\/em><\/strong>, <\/span>11<\/a><\/span><\/strong>:<\/a><\/span><\/strong>33<\/a>.\u00a0Highly accessed. Corresponding author.<\/span><\/span><\/span><\/p>\n

\u2022 <\/span>HACQUARD S, VENEAULT-FOURREY C, DELARUELLE C, FREY P, MARTIN F, <\/span>DUPLESSIS S<\/span><\/strong> (<\/span>2011<\/span><\/strong>) Validation of <\/span><\/span>Melampsora larici-populina <\/span><\/em>reference genes for<\/span> in planta<\/span><\/em> RT-quantitative PCR expression profiling during time-course infection of poplar leaves. <\/span><\/span>Physiological and Molecular Plant Pathology <\/span>75:<\/a><\/span>106-112<\/a><\/span><\/span><\/span><\/span><\/span><\/em><\/strong><\/span>. Corresponding author.<\/span><\/span><\/span><\/span><\/div>\n
\u2022 <\/span>KAYTOUE M, KUZNETSOV SO, NAPOLI A, DUPLESSIS S <\/span><\/strong>(<\/span>2011<\/span><\/strong>) Mining gene expression data with pattern structures in formal concept analysis. <\/span>Information Sciences 181:<\/a>1989-2001<\/a>.<\/span><\/span><\/span><\/strong><\/span><\/em><\/div>\n

\u2022 <\/span>KAYTOUE M, <\/span>DUPLESSIS S<\/span><\/strong>, NAPOLI A (<\/span>2011<\/span><\/strong>) Toward the discovery of itemsets with significant variations in gene expression matrices. In B Fichet et al eds, <\/span>Classification and Multivariate Analysis for Complex Data Structures<\/span><\/strong><\/em>, Studies in Classification, Data Analysis, and Knowledge Organisation (Springer). Pp-465-473. DOI: 10.1007\/978-3-642-13312-1_49<\/a><\/span><\/span><\/p>\n

\u2022 <\/span>PLOMION C, VINCENT D, BEDON F, JOETS J, BONHOMME J, MORABITO D, <\/span>DUPLESSIS S<\/span><\/strong>, NILSSON R, WINGSLE G, LARSSON C, JOLIVET Y, RENAUT J, PECHANOVA O, YUCEER C (<\/span>2011<\/span><\/strong>) <\/span><\/span>Poplar proteomics: update and future challenges.\u00a0In Genetics, genomics and breeding of Poplar, Joshi CP, DiFazio SP & Kole C (eds), Science Publishers, Enfield, New Hampshire, USA<\/em><\/span>. <\/em>Pp-128-165.<\/span><\/span><\/span><\/p>\n

\u2022 <\/span>VIEIRA A, TALHINHAS P, LOUREIRO A, <\/span>DUPLESSIS S<\/span><\/strong>, FERNANDEZ D, SILVA MC, PAULO OS, AZINHEIRA HG (<\/span>2011<\/span><\/strong>) <\/span><\/span>Hemileia vastatrix <\/span><\/em>gene expression during the infection process of coffee leaves. <\/span>In Proccedings of the 23rd Conference of the\u00a0Association for Science and Information on Coffee<\/a><\/span><\/em>. pp-754-758.<\/span><\/span><\/em><\/div>\n
<\/div>\n

\u2022 <\/span>TALHINHAS P, AZINHEIRA HG, LOUREIRO A, BATISTA D, VIEIRA B, PINA-MARTINS F, TISSERANT E, PETITOT A-S, PAULO OS, <\/span>DUPLESSIS S<\/span><\/strong>, SILVA MC, FERNANDEZ D (<\/span>2011<\/span><\/strong>)\u00a0Overview of the functional virulent genome of the coffee leaf rust pathogen <\/span><\/span>Hemileia vastatrix<\/span><\/em>. <\/span>In Proccedings of the 23rd Conference of the\u00a0Association for Science and Information on Coffee<\/a><\/span><\/em>. pp-414-422.<\/span><\/em><\/span><\/p>\n

\u2022 <\/span>PETRE B, MAJOR I, FREY P, MARTIN F, ROUHIER N, <\/span>DUPLESSIS S<\/span><\/strong> (<\/span>2011<\/span><\/strong>) Les apports de la g\u00e9nomique pour l’\u00e9tude des familles multig\u00e9niques: exemple des thaumatin-like proteins (TLPs) chez le peuplier. Actes du s<\/em><\/span>\u00e9minaire 2011 de l’Ecole Doctorale RP2E, Nancy, France (ISBN 2-9518564-8-2). 8 pages.<\/span><\/em><\/p>\n

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\u00a0<\/span><\/div>\n<\/div>\n

2010<\/span><\/strong><\/h2>\n

\u2022 <\/span>HACQUARD S, DELARUELLE C, LEGUE V, TISSERANT E, KOHLER A, FREY P, MARTIN F, <\/span>DUPLESSIS S<\/span><\/strong> (<\/span>2010<\/span><\/strong>) Laser capture microdissection of uredinia formed by <\/span>Melampsora larici-populina<\/span><\/em> revealed a transcriptional switch between biotrophy and sporulation. <\/span>Molecular Plant-Microbe Interactions<\/span><\/strong><\/em>23<\/a><\/span><\/strong>:1275-1286<\/a>. Corresponding author.<\/span><\/p>\n

\u2022 <\/span>MARTIN F, KOHLER A, MURAT C, BALESTRINI R, COUTINHO PM, JAILLON<\/span>O, MONTANINI<\/span>B, MORIN<\/span>E, NOEL B, PERCUDANI R, PORCEL B, RUBINI<\/span>A, AMICUCCI A, AMSELEM<\/span>J, ANTHOUARD<\/span>V, ARCIONI<\/span>S, ARTIGUENAVE<\/span>F, AURY<\/span>JM, BALLARIO<\/span>P, BOLCHI<\/span>A, BRENNA<\/span>A, BRUN<\/span>A, BUEE<\/span>M, CANTAREL<\/span>B, CHEVALIER<\/span>G, COULOUX<\/span>A, DA SILVA<\/span>C, DENOEUD<\/span>F, <\/span>DUPLESSIS<\/span><\/strong>S<\/span><\/strong>, GHIGNONE S, HILSELBERGER<\/span>B, IOTTI<\/span>M, MAR\u00c7AIS<\/span>B, MELLO<\/span>A, MIRANDA<\/span>M, PACIONI<\/span>G, QUESNEVILLE<\/span>H, RICCIONI<\/span>C, RUOTOLO<\/span>R, SPLIVALLOR, STOCCHI V<\/span>, TISSERANT<\/span>E, VISCOMI<\/span>AR, ZAMBONELLI<\/span>A, ZAMPIERI<\/span>E, HENRISSAT<\/span>B, LEBRUN<\/span>MH, PAOLOCCI<\/span>F, BONFANTE<\/span>P, OTTONELLO S, WINCKER<\/span>P (<\/span>2010<\/span><\/strong>) P\u00e9rigord Black Truffle genome uncovers evolutionary origins and mechanisms of symbiosis. <\/span>Nature\u00a0<\/span><\/strong><\/em>464<\/a><\/span><\/strong>:1033-1038<\/a>.<\/span><\/p>\n

\u2022 <\/span>MAJOR I, NICOLE M-C, <\/span>DUPLESSIS S<\/span><\/strong>, SEGUIN A (<\/span>2010<\/span><\/strong>) Photosynthetic and respiratory changes in leaves of poplar elicited by rust infection. <\/span>Photosynthesis Research <\/span><\/em>104<\/a><\/span>:41-48<\/a>.<\/span><\/span><\/strong><\/div>\n

\u2022 <\/span>DUPLESSIS S<\/span><\/strong> and colleagues. (<\/span>2010<\/span><\/strong>) Abstracts of oral and poster presentations given at the 4th International Rusts of Forest Trees Conference, Florence, Italy, 3-6 May 2010 (Contributor to 3 presentations and 2 posters). <\/span>Phytopathologia Mediterranea<\/span><\/em> 49<\/a><\/span><\/strong>:421-434<\/a>.<\/span><\/span><\/span><\/strong><\/p>\n

\u2022 <\/span>JOLY DL, HACQUARD S, FEAU N, TANGUAY P, MARTIN F, HAMELIN R, <\/span>DUPLESSIS S <\/span><\/strong>(<\/span>2010<\/span><\/strong>) Chasing effectors in the secretome of Melampsora larici-populina. Paper 77 <\/span>In<\/span><\/em> Biology of plant-microbe interactions, Vol. 7<\/strong>, <\/span>H. Antoun, T. Avis, L. Brisson, D. Pr\u00e9vost, and M. Trepanier, eds. International Society for Molecular Plant-Microbe Interactions, St. Paul, MN. Proceedings of the 2009 IS-MPMI congress in Qu\u00e9bec. Corresponding author.<\/span><\/span><\/em><\/span><\/p>\n

\u00a0<\/span><\/strong><\/div>\n

2009<\/span><\/strong><\/h2>\n

\u2022 <\/span>GUERRA F, <\/span>DUPLESSIS S<\/span><\/strong>, KOHLER A, MARTIN F, TAPIA J, LEBED P, ZAMUDIO F, GONZALEZ E (<\/span>2009<\/span><\/strong>) Gene expression analysis of Populus deltoides roots subjected to copper stress. <\/span>Environmental and Experimental Botany\u00a0<\/span><\/em><\/strong>67<\/span><\/strong>:335-344.<\/span><\/span><\/p>\n

\u2022 <\/span>DUPLESSIS S<\/span><\/strong>, MAJOR I, MARTIN F, SEGUIN A (<\/span>2009<\/span><\/strong>) Poplar and pathogen interactions: insights from genome-wide analyses of resistance and defense gene families and expression profiling of poplar leaves upon infection with rust. <\/span>Critical Reviews in Plant Science\u00a0<\/span><\/span><\/em><\/strong>28<\/span><\/strong>:309-334. Review. Corresponding author.<\/span><\/p>\n

\u2022 <\/span>KEMPPAINEN M, <\/span>DUPLESSIS S<\/span><\/strong>, MARTIN F, PARDO AG (<\/span>2009<\/span><\/strong>) RNA silencing in the model mycorrhizal fungus <\/span>Laccaria bicolor<\/span><\/em>: gene Knock-down of nitrate reductase results in inhibition of symbiosis with <\/span>Populus<\/span><\/em>. <\/span>Environnemental Microbiology <\/span><\/em>11<\/span><\/strong>:1878-1896.<\/span><\/p>\n

\u2022 <\/span>KAYTOUE-UBERALL M, <\/span><\/span>DUPLESSIS S<\/span><\/strong>, KUZNETSOV SO, NAPOLI A (<\/span>2009<\/span><\/strong>) Two FCA-based methods for mining gene expression data. In Proceedings of the 7th International Conference on Formal Concept Analysis (ICFCA 2009), Ferre S & Rudolph S (eds), published in <\/span><\/span>Lecture Notes in Artificial Intelligence<\/span><\/em><\/strong>, <\/span>Vol 5548<\/span><\/strong>, Springer, Berlin, Germany. Pp-251-266. DOI: 10.1007\/978-3-642-01815-2_19<\/span><\/p>\n

\u2022 <\/span>ROUXEL T, <\/span>DUPLESSIS S<\/span><\/strong>, VIAUD M, AMSELEM J, LEBRUN M-H (<\/span>2009<\/span><\/strong>) La g\u00e9nomique fongique: la g\u00e9nomique des champignons pathog\u00e8nes des plantes en France. <\/span>Biofutur<\/span><\/em> 296<\/span><\/strong>:31-35.<\/span><\/p>\n

\u00a0<\/strong><\/p>\n

2008<\/span><\/strong><\/h2>\n

\"PMB-April2008cover\"\u2022 <\/span>KOHLER A, RINALDI C, <\/span>DUPLESSIS S<\/span><\/strong>, BAUCHER M, GEELEN D, HELLSTEN U, \u00a0DUCHAUSSOY F, DIFAZIO S, BOERJAN W, MARTIN F <\/span>(2008)<\/span><\/strong> Genome-Wide \u00a0identification of <\/span>NBS<\/span><\/em> resistance genes in <\/span>Populus trichocarpa<\/span><\/em>. <\/span>Plant Molecular \u00a0Biology<\/span><\/em> 66<\/span><\/strong>:619-636. Cover of PMB april 2008 issue.<\/span><\/p>\n

\u2022 <\/span>KEMPPAINEN M, <\/span>DUPLESSIS S<\/span><\/strong>, MARTIN F, PARDO AG <\/span>(2008)<\/span><\/strong> T-DNA insertion, plasmid rescue and integration analysis in the model mycorrhizal fungus <\/span>Laccaria bicolor<\/span><\/em>. <\/span>Microbial Biotechnology\u00a0<\/span><\/em>1<\/span><\/strong>:258-269.<\/span><\/p>\n

\u2022 <\/span>MARTIN F, AERTS A, AHREN D, BRUN A, DUCCHAUSSOY F, KOHLER A, LINDQUIST E, SALAMOV A, SHAPIRO HJ, WUYTS J, BLAUDEZ D,BUEE M, BROKSTEIN P, CANBACK B, COHEN D, COURTY PE, COUTINHO PM, DANCHIN EGJ, DELARUELLE C, DETTER JC, DEVEAU A, DIFAZIO S, <\/span>DUPLESSIS S<\/span><\/strong>, FRAISSINET L, LUCIC E, FREY-KLETT P, FOURREY C, FEUSSNER I, GAY G, GIBON J, GRIMWOOD J, HOEGGER P, JAIN P, KILARU S, LABBE J, LIN YC, LE TACON F, MARMEISSE E, MELAYAH D, MONTANINI B, MURATET M, NEHLS U, NICULITA H, OUDOT LE-SECQ MP, PEREDA V, PETER M, QUESNEVILLE H, RAJASHEKAR B, REICH M, ROUHIER N, SCHMUTZ J, YIN T, CHALOT M, HENRISSAT B, KUES U, VAN DE PEER Y, PODILA G, POLLE A, PUKKILA P, RICHARDSON PM, ROUZE P, SANDERS I, STAJICH J, TUNLID A, TUSKAN G, GRIGORIEV IV<\/span> (2008)<\/span><\/strong> Symbiosis insights from the genome of the mycorrhizal basidiomycete <\/span>Laccaria bicolor<\/span><\/em>. <\/span>Nature<\/span><\/em> 452<\/span><\/strong>:88-92.<\/span><\/p>\n

\u2022 <\/span>KAYTOUE-UBERALL M, <\/span>DUPLESSIS S<\/span><\/strong>, NAPOLI A (<\/span>2008<\/span><\/strong>) Using formal concept analysis for the extraction of groups of co-expressed genes. In Proceedings of the 2nd International Conference on Modelling, Computation and Optimization in Information Systems and Management Sciences (MCO\u201908), Thi HAL, Bouvry P & Dinh TP (eds), published in <\/span>Communications in Computer and Information Science<\/span><\/em><\/strong>, Springer, Berlin, Germany. Pp-439-449. DOI: 10.1007\/978-3-540-87477-5_47<\/span><\/p>\n

\u2022 <\/span>DUPLESSIS S<\/span><\/strong>, KUHN H (<\/span>2008<\/span><\/strong>) Meeting report: Secretomic climax in plant-fungal interactions. <\/span>The New Phytologist <\/span><\/em>179<\/span><\/strong>:907-910. Corresponding author.<\/span><\/p>\n

\u2022 <\/span>KAYTOUE-UBERALL M, <\/span>DUPLESSIS S<\/span><\/strong>, NAPOLI A <\/span>(2008)<\/span><\/strong> Toward the discovery of itemsets with significant variations in gene expression matrices. <\/span>Proceedings of the 1<\/span><\/em>st<\/span><\/sup><\/em> joint meeting of the Soci\u00e9t\u00e9 Francophone de Classification and the Classification and Data Analysis Group of SIS (SFC-CLADAG), June 11-13<\/span><\/em>th<\/span><\/sup><\/em> 2008, Caserta, Italy<\/span><\/em>. pp333-336.<\/span><\/p>\n

\u00a0<\/span><\/p>\n

2007<\/span><\/strong><\/h2>\n

\u2022 <\/span>RINALDI C, KOHLER A, FREY P, DUCHAUSSOY F, NINGRE N, COULOUX A, WINCKER P, LE THIEC D, FLUCH S, MARTIN F, <\/span>DUPLESSIS S (2007)<\/span><\/strong> Transcript Profiling of Poplar Leaves upon Infection with Compatible and Incompatible Strains of the Foliar Rust <\/span>Melampsora larici-populina<\/span><\/em>. <\/span>Plant Physiology, <\/span><\/em>144<\/span><\/strong>:347-366. Corresponding author.<\/span><\/p>\n

\u2022 <\/span>MARTIN F<\/span><\/span><\/span>, <\/span>KOHLER A<\/span><\/span><\/span>, <\/span>DUPLESSIS S<\/span><\/strong><\/span><\/span> (<\/span>2007<\/span><\/strong>) Living in harmony in the wood underground: ectomycorrhizal genomics. <\/span><\/span>Current Opinion in Plant Biology<\/span><\/em> 10<\/span><\/strong>:204-210. Review.<\/span><\/p>\n

\u00a0<\/strong><\/p>\n

2<\/span><\/strong>006<\/span><\/strong><\/h2>\n

\"Tuskan\u2022 <\/span>Tuskan G, DiFazio S, Bohlmann J, Grigoriev I, Hellsten U, Jansson S, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapman J, Chen G-L, Cooper D, Coutinho P, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S, D\u00e9jardin A, dePamphilis C, Detter J, Dirks B, Dubchak I, <\/span><\/span>Duplessis\u00a0S<\/span><\/strong>, Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J, Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B, Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M, Jorgensen R, Joshi C, Kangasj\u00e4rvi J, Karlsson J, Kelleher C, Kirkpatrick R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Lepl\u00e9 J-C, Locascio P, Luo Y, Lucas S, Martin\u00a0F, Montanini B, Napoli C, Nelson DR, Nelson C, Nieminen K, Nilsson O, Peter G, Philippe R, Pilate G, Poliakov A, Razumovskaya J, Richardson P, Rinaldi\u00a0C, Ritland K, Rouz\u00e9 P, Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F, Terry A, Tsai C, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S, Yang G, Yin T, Douglas C, Sandberg G, Van de Peer Y, Rokhsar D. (<\/span>2006<\/span><\/strong>) The genome of black cottonwood, <\/span>Populus trichocarpa <\/span><\/em>(Torr. & Gray ex Brayshaw). <\/span>Science <\/span><\/em>313<\/span><\/strong>:1596-1604.<\/span><\/p>\n

\u2022 <\/span>SELOSSE M-A, <\/span>DUPLESSIS S<\/span><\/strong> (<\/span>2006<\/span><\/strong>) Meeting report: More complexity in the mycorrhizal word. <\/span>The New Phytologist<\/span><\/em>172<\/span><\/strong>:600-604.<\/span><\/p>\n

\u2022 <\/span>KOHLER A, PETER M, <\/span>DUPLESSIS S<\/span><\/strong>, MARTIN F (<\/span>2006<\/span><\/strong>) Microbial growth and visualisation of bacteria and fungi: Synthesis of ectomycorrhiza. In Hanbook of methods used in Rhizosphere Research<\/em><\/strong>, Luster J, Finlay RD (eds), Swiss Federal Research Institute WSL, Birmendorf, Suisse. pp399-400.<\/span><\/p>\n

\u2022 <\/span>PETER M, KOHLER A,<\/span> DUPLESSIS S<\/span><\/strong>, MARTIN F (<\/span>2006<\/span><\/strong>) Identification of single species and communities: RNA extraction from ectomycorrhizas. In Hanbook of methods used in Rhizosphere Research<\/em><\/strong>, Luster J, Finlay RD (eds), Swiss Federal Research Institute WSL, Birmendorf, Suisse. pp457-459.<\/span><\/p>\n

\u2022 <\/span>PETER M, KOHLER A, <\/span>DUPLESSIS S<\/span><\/strong>, MARTIN F (<\/span>2006<\/span><\/strong>) Gene expression of single species and communities: Large-scale analysis of gene expression in ectomycorrhizas. In Hanbook of methods used in Rhizosphere Research<\/em><\/strong>, Luster J, Finlay RD (eds), Swiss Federal Research Institute WSL, Birmendorf, Suisse. pp482-483.<\/span><\/p>\n

\u00a0<\/span><\/div>\n

2005<\/span><\/strong><\/h2>\n

\u2022 <\/span>GABELLA S, ABB\u00c0 S, <\/span>DUPLESSIS S<\/span><\/strong>, MONTANINI B, MARTIN F, BONFANTE P (<\/span>2005<\/span><\/strong>). Transcript Profiling Reveals Novel Marker Genes Involved in Fruiting Body Formation in <\/span><\/span>Tuber borchii<\/span><\/em>. <\/span>Eukaryotic Cell<\/span><\/em> 4<\/span><\/strong>:1599-1602.<\/span><\/p>\n

\u2022 <\/span>PARDO A G, KEMPPAINEN M, VALDEMOROS D, <\/span>DUPLESSIS S<\/span><\/strong>, MARTIN F, TAGU D (<\/span>2005<\/span><\/strong>). T-DNA transfer from <\/span><\/span>Agrobacterium tumefaciens <\/span><\/em>to the ectomycorrhizal fungus <\/span>Pisolithus microcarpus<\/span><\/em>. <\/span>Revista Argentina de Microbiolog\u00eda<\/span><\/em> 37<\/span><\/strong>:69-72. <\/span><\/p>\n

\u2022 <\/span>GUPTA P, <\/span>DUPLESSIS S<\/span><\/strong>, WHITE H, KARNOSKY D F, MARTIN F, PODILA G (<\/span>2005<\/span><\/strong>). Gene expression patterns of trembling aspen trees following long-term exposure to interacting elevated CO<\/span><\/span>2<\/span><\/sub> and tropospheric O<\/span>3<\/span><\/sub>. <\/span>The New Phytologist<\/span><\/em> 167<\/span><\/strong>:129-142. co-1st author.<\/span><\/p>\n

\u2022 <\/span>DUPLESSIS S<\/span><\/strong>, COURTY P-E, TAGU D, MARTIN F (<\/span>2005<\/span><\/strong>). Transcript patterns associated with ectomycorrhiza development in <\/span><\/span>Eucalyptus globulus <\/span><\/em>and <\/span>Pisolithus microcarpus<\/span><\/em>.<\/span>The New Phytologist <\/span><\/strong><\/em>165<\/span><\/strong>:599-611.<\/span><\/p>\n

\u00a0<\/strong><\/p>\n

2<\/span><\/strong>004<\/span><\/strong><\/h2>\n

\u2022 <\/span>ROUHIER N, GELHAYE E, GUALBERTO J M, JORDY M-N, DE FAY E, HIRASAWA M, <\/span>DUPLESSIS\u00a0S<\/span><\/strong>, LEMAIRE S D, FREY P, MARTIN F, MANIERI W, KNAFF D B, JACQUOT J-P (<\/span>2004<\/span><\/strong>). Poplar Peroxiredoxin Q. A Thioredoxin-Linked Chloroplast Antioxidant Functional in Pathogen Defense. <\/span><\/span>Plant Physiology <\/span><\/em>134<\/span><\/strong>:1027-1038.<\/span><\/p>\n

\u2022 <\/span>MARTIN F, <\/span>DUPLESSIS S<\/span><\/strong>, KOHLER A, TAGU D <\/span>(<\/span>2004)<\/span> <\/span><\/strong>Chapter 4. Exploring the transcriptome of the ectomycorrhizal symbiosis. <\/span>In: Molecular Genetics and Breeding of Forest Trees<\/span><\/em> (Kumar S, Fladung M, edts), Haworth’s Food Products Press, New York, pp. 81-109.<\/span><\/p>\n

\u2022 <\/span>KOHLER A, PETER M, JAMBOIS A, COURTY PE, <\/span>DUPLESSIS S<\/span><\/strong>, LAPEYRIE F, MARTIN F (<\/span>2004<\/span><\/strong>) Exploring the transcriptome of the ectomycorrhizal symbiosis. Meeting abstract APS 2004, <\/span>Phytopathology <\/span><\/strong><\/em>94<\/span><\/strong>:S133.<\/span><\/span><\/p>\n

\u00a0<\/span><\/span><\/p>\n

2003<\/span><\/strong><\/h2>\n

\u2022 <\/span>PETER M, COURTY P-E, KOHLER A, DELARUELLE C, MARTIN D, TAGU D, FREY-KLETT\u00a0P,<\/span>DUPLESSIS S<\/span><\/strong>, CHALOT M, PODILA G, MARTIN F (<\/span>2003<\/span><\/strong>). Analysis of expressed sequence tags from the ectomycorrhizal basidiomycetes<\/span> Laccaria bicolor<\/span><\/em> and<\/span> Pisolithus microcarpus<\/span><\/em>. <\/span>The New Phytologist <\/span><\/em>159<\/span><\/strong>:117-129.<\/span><\/p>\n

\u2022 <\/span>HUGOT K & <\/span>DUPLESSIS S<\/span><\/strong> (<\/span>2003<\/span><\/strong>) R\u00e9seaux d’ADN\u00a0: puces \u00e0 ADN, filtres d’ADNc. <\/span>In Principes des Techniques de Biologie Mol\u00e9culaire, 2<\/span><\/em>nde<\/span><\/sup><\/em> \u00e9dition revue et augment\u00e9e<\/span><\/em> (D. Tagu & C. Moussard, \u00e9ds), INRA Editions. pp 65-75.<\/span><\/p>\n

\u00a0<\/span><\/div>\n

2002<\/span><\/strong><\/h2>\n

\u2022 <\/span>LACOURT I, <\/span>DUPLESSIS S<\/span><\/strong>, ABBA S, BONFANTE P, MARTIN F (<\/span>2002<\/span><\/strong>). Isolation and characterization of differentially expressed genes in the mycelium and fruit body of <\/span>Tuber borchii<\/span><\/em>. <\/span>Applied and Environmental Microbiology <\/span><\/em>68<\/span><\/strong>:4574-4582. co-1st author.<\/span><\/p>\n

\u2022 <\/span>BARKER SJ, <\/span>DUPLESSIS S<\/span><\/strong>, TAGU D (<\/span>2002<\/span><\/strong>). The application of genetic approaches for investigations of mycorrhizal symbioses. <\/span>Plant and Soil<\/span><\/em> 244<\/span><\/strong>:85-95.<\/span><\/p>\n

\u2022 <\/span>DUPLESSIS S<\/span><\/strong>, TAGU D, MARTIN F (<\/span>2002<\/span><\/strong>). Living together underground\u00a0: a molecular glimpse of the ectomycorrhizal symbiosis <\/span>In Molecular biology of fungal development<\/span><\/em> (Osiewacz, ed.). Mycology Series, Dekker & Dekker, New York, pp 297-323.<\/span><\/p>\n

\u2022 <\/span>MARTIN F, <\/span>DUPLESSIS S<\/span><\/strong>, DITENGOU F A, LAGRANGE H, VOIBLET C, LAPEYRIE F (<\/span>2002<\/span><\/strong>). Rhizospheric signals and early molecular events in the ectomycorrhizal symbiosis <\/span>In<\/span><\/em>Plant signal transduction\u00a0: frontiers in molecular biology<\/span><\/em>(Scheel D & Wasternanck C, edts). Oxford University Press, pp 272-288.<\/span><\/p>\n

\u00a0<\/span><\/p>\n

2001<\/span><\/strong><\/h2>\n

\u2022 <\/span>MARTIN F, <\/span>DUPLESSIS S<\/span><\/strong>, DITENGOU F, LAGRANGE H, VOIBLET C, LAPEYRIE F (<\/span>2001<\/span><\/strong>). Developmental cross talking in the ectomycorrhizal symbiosis\u00a0: signals and communication genes. <\/span>New Phytologist<\/span><\/em><\/strong>151<\/span><\/strong>:145-154.<\/span><\/p>\n

\u2022 <\/span>DUPLESSIS S, <\/span><\/strong>SORIN C, VOIBLET C, PALIN B, MARTIN F, TAGU D (<\/span>2001<\/span><\/strong>). Cloning and expression analysis of a new hydrophobin cDNA from the ectomycorrhizal basidiomycete <\/span>Pisolithus<\/span><\/em>. <\/span>Current Genetics<\/span><\/em><\/strong>39<\/span><\/strong>:335-339.<\/span><\/p>\n

\u2022 <\/span>VOIBLET C, <\/span>DUPLESSIS S<\/span><\/strong>, ENCELOT N, MARTIN F (<\/span>2001<\/span><\/strong>). Identification of symbiosis-regulated genes in <\/span>Eucalyptus globulus-Pisolithus tinctorius<\/span><\/em> ectomycorrhiza by differential hybridization of arrayed cDNAs. <\/span>The Plant Journal<\/span><\/em> 25<\/span><\/strong>:181-192. co-1st author.<\/span><\/p>\n

\u2022 <\/span>DUPLESSIS S<\/span><\/strong> (<\/span>2001<\/span><\/strong>) <\/span>PhD Thesis <\/span><\/strong>(in french) – Caract\u00e9risation par ing\u00e9nierie g\u00e9nomique des profils d\u2019expression g\u00e9nique de <\/span>Pisolithus tinctorius<\/span><\/em> et d\u2019<\/span>Eucalyptus globulus<\/span><\/em> au cours du d\u00e9veloppement de la symbiose ectomycorhizienne. Th\u00e8se de Doctorat, Universit\u00e9 Henri Poincar\u00e9-NancyI. pp105.<\/span><\/p>\n

\u2022 <\/span>DUPLESSIS S<\/span><\/strong> (<\/span>1998<\/span><\/strong>) <\/span>MSc <\/span><\/strong>(in french) – Caract\u00e9risation et \u00e9tude de l\u2019expression de g\u00e8nes des voies de transduction chez le champignon ectomycorhizien <\/span>Pisolithus tinctorius<\/span><\/em>. Dipl\u00f4me d\u2019Etudes Approfondies, Universit\u00e9 Henri Poincar\u00e9-Nancy I. pp20.<\/span><\/p>\n

\u2022 <\/span>DUPLESSIS S <\/span><\/strong>(<\/span>1997<\/span><\/strong>) <\/span>MSc<\/span><\/strong> (in french) Etude des compos\u00e9s ph\u00e9noliques de la symbiose <\/span>Betula pendula<\/span><\/em>–<\/span>Paxillus involutus <\/span><\/em>par HPLC au cours des stades pr\u00e9coces de mycorhization. M\u00e9moire de Ma\u00eetrise de Biologie Cellulaire et Physiologie V\u00e9g\u00e9tale, Universit\u00e9 Henri Poincar\u00e9-Nancy I. pp25.<\/span><\/p>\n

\u00a0<\/strong><\/p>\n

C<\/span><\/span>ONFERENCES & MEETINGS<\/span><\/span><\/h2>\n

Lost track of the seminar and conference cataloging at some point…<\/em><\/p>\n

\u2022 DUPLESSIS S<\/strong>, PETRE B, GERMAIN H, HECKER A, FREY P, HALKETT F, DE MITA S, JOLY DL, HACQUARD S, SEGUIN A, ROUHIER N. Investigating virulence effectors in the poplar-poplar rust pathosystem. 30th New Phytologist Symposium\u00a0Immunomodulation by plant-associated organisms<\/a><\/em>, Fallen Leaf Lake, CA, USA,\u00a0September 2012<\/strong> (Invited Speaker<\/strong>)<\/p>\n

\u2022 DUPLESSIS S<\/strong>. Genomics of the poplar-poplar rust interaction: an emerging model pathosystem in forest pathology. 1st Symposium of the Annals of Forest Science<\/em> journal, Champenoux, France,\u00a0March 2012<\/strong> (Invited <\/strong>Speaker<\/strong>)<\/span><\/p>\n

\u2022 <\/span>DUPLESSIS S<\/strong>. Candidate effectors of\u00a0Melampsora larici-populina<\/em>, the causal agent of the poplar leaf rust disease. REID network, Fungal Pathogens group meeting, Paris, France,\u00a0december 2011<\/strong> (speaker<\/strong>).<\/p>\n

\u2022 <\/span>DUPLESSIS S<\/strong>. Candidate effectors of Melampsora larici-populina<\/em>, the causal agent of the poplar leaf rust disease. Effectome network 4th meeting, Lauret, France, september 2011<\/strong> (speaker<\/strong>).<\/span><\/p>\n

\u2022 <\/span>DUPLESSIS S<\/strong>. Comparative genomic analysis of rust fungi. Basidiomycete meeting, satellite workshop of the 2011 JGI User Meeting, Walnut Creek, CA, USA, march 2011 (Speaker<\/strong>).<\/span><\/strong><\/span><\/p>\n

\u2022 <\/span>DUPLESSIS S<\/strong>, HACQUARD S, JOLY DL, LIN Y-C, AND THE MELAMPSORA GENOME CONSORTIUM. Genome-wide analysis of the secretome repertoire in the poplar rust pathogen Melampsora larici-populina<\/em>. 26th Fungal Genetics Conference, Asilomar, CA, USA, march 2011<\/strong> (Poster<\/strong>).<\/span><\/p>\n

\u2022 <\/span>DUPLESSIS S.<\/span><\/strong> Les interactions Arbres-Champignons \u00e0 l’\u00e8re de la g\u00e9nomique : Emergence du pathosyst\u00e8me mod\u00e8le Peuplier\/Melampsora. Journ\u00e9e scientifique de l’IFR110 EFABA, Nancy, France, <\/span>December 2010\u00a0(<\/span><\/span>Speaker<\/span><\/strong>).<\/span><\/span><\/span><\/strong><\/p>\n

\u2022 <\/span>DUPLESSIS S<\/span><\/strong>. Candidate rust effectors in the secretome of the obligate fungal biotroph <\/span>Melampsora larici-populina<\/span><\/em>. Effectome Network 3rd Meeting, Lauret, France, <\/span>October 2010\u00a0(<\/span><\/span>Speaker<\/span><\/strong>)<\/span>.<\/span><\/span><\/span><\/strong><\/p>\n

\u2022 <\/span>DUPLESSIS S<\/span><\/span><\/strong>. The poplar-rust interaction through the lens of genomics: an emerging model pathosystem in forest pathology. Laurentian Forestry Centre, Canadian Forest Service, Qu\u00e9bec, Canada, May <\/span><\/span>2010 <\/span><\/span><\/strong>(<\/span><\/span>seminar on invitation<\/span><\/span><\/strong>).<\/span><\/span><\/p>\n

\u2022 <\/span>DUPLESSIS S<\/span><\/strong>.<\/span><\/strong> Chasing Effectors in the Genomes of Fungal Symbionts and Pathogens of Trees. 110th General Meeting of the American Society for Microbiology. Division X Lectures, San Diego, CA, USA, May <\/span>2010<\/span><\/strong> (<\/span>invited speaker<\/span><\/strong>).<\/span><\/p>\n

\u2022 <\/span>Duplessis S<\/span><\/strong>, Lin Y-C, Tisserant E, Hilselberger B, Hacquard S, Joly D, Veneault-Fourrey C, Feau N, Tangay P, Kohler A, Lindquist E, Cantarel B, Couthinho P, Henrissat B, Frey P, Murat C, Amselem J, JGI Sequencing and Assembling Teams, Aerts A, Rouz\u00e9 P, Van de Peer Y, Hamelin R, Grigoriev I, Martin F. The genome sequence of the poplar rust pathogen <\/span>Melampsora larici-populina<\/span><\/em>. 4th IUFRO\u00a0International meeting on Rusts of Forest Trees, Florence, Italy, May <\/span>2010<\/span><\/strong> (<\/span>invited speaker<\/span><\/strong>). Abstract published in Phytopathol Mediterr<\/em> 49<\/strong>:421-434.<\/span><\/p>\n

\u2022 <\/span>Hacquard S, Delaruelle C, Tisserant E, Legu\u00e9 V, Kohler A, Frey P, Martin F, Duplessis S.\u00a0Laser capture microdissection of uredinia formed by Melampsora larici-populina<\/em> revealed a transcriptional switch between biotrophy and sporulation<\/span><\/span><\/strong><\/span>. 4th IUFRO\u00a0International meeting on Rusts of Forest Trees, Florence, Italy, May <\/span>2010<\/span><\/strong> (<\/span>Poster<\/span><\/strong>). Abstract published in\u00a0Phytopathol Mediterr<\/em> 49<\/strong>:421-434.<\/span><\/p>\n

\n

\u2022 <\/span>Fernandez D, Tisserant E, Talhinhas P, Azinheira H, Petitot A-S, <\/span>Duplessis S.<\/span><\/span><\/strong> Identification of Hemileia vastatrix<\/em> in planta<\/em> expressed genes through 454-pyrosequencing of rust-infected Coffea arabica<\/em> leaf tissues<\/span>. 4th IUFRO\u00a0International meeting on Rusts of Forest Trees, Florence, Italy, May <\/span>2010<\/span><\/strong> (<\/span>Poster<\/span><\/strong>). Abstract published in\u00a0Phytopathol Mediterr<\/em> 49<\/strong>:421-434.<\/span><\/p>\n<\/div>\n

\u2022 <\/span>DUPLESSIS S. <\/span><\/strong>Chasing effectors in the genomes of fungal symbionts and pathogens of trees. European Conference on Fungal Genetics, ECFG10, Netherlands, April <\/span>2010<\/span><\/strong> (<\/span>invited speaker<\/span><\/strong>).<\/span><\/p>\n

\u2022 <\/span>DUPLESSIS S.<\/span><\/strong> The genome sequence of the poplar leaf rust <\/span>Melampsora larici-populina<\/span><\/em>. Basidiomycete meeting, mini-symposium at the JGI User Meeting. Walnut Creek, CA, USA, March <\/span>2010 (<\/span><\/span>Speaker<\/span><\/strong>)<\/span>.<\/span><\/span><\/span><\/strong><\/p>\n

\u2022 <\/span>DUPLESSIS S.<\/span><\/strong> The genome sequence of the poplar leaf rust <\/span>Melampsora larici-populina<\/span><\/em>. 8\u00e8mes rencontres de Phytopathologie-Mycologie de la Soci\u00e9t\u00e9 Fran\u00e7aise de Phytopathologie, JJC2010. Aussois, January <\/span>2010 (<\/span><\/span>Speaker<\/span><\/strong>)<\/span>.<\/span><\/span><\/span><\/strong><\/p>\n

\u2022 <\/span>DUPLESSIS S<\/span><\/strong>. The poplar-rust interaction through the lens of genomics: an emerging model pathosystem in forest pathology. University of Helsinki, December <\/span>2009 <\/span><\/strong>(<\/span>seminar on invitation<\/span><\/strong>)<\/span><\/p>\n

\u2022 <\/span>DUPLESSIS S.<\/span><\/strong> Sequencing the <\/span>Populus<\/span><\/em> community\u00a0genome for a better understanding of tree-microbe interactions. university of Helsinki, December <\/span>2009<\/span><\/strong> (<\/span>seminar on invitation<\/span><\/strong>)<\/span><\/span><\/div>\n

\u2022 <\/span>DUPLESSIS S<\/span><\/strong>. The poplar-rust interaction through the lens of genomics: an emerging model pathosystem in forest pathology. 3rd UPRA Meeting, Nancy, France, November <\/span>2009 <\/span><\/strong>(<\/span>invited speaker<\/span><\/strong>)<\/span><\/p>\n

\u2022 <\/span>DUPLESSIS S<\/span><\/strong>, HACQUARD S, JOLY D, FEAU N, LIN Y-C, TISSERANT E, FREY P, HAMELIN R, MARTIN F, JGI SEQUENCING & ASSEMBLING STAFF. Chasing effectors in the secretome of <\/span>Melampsora larici-populina<\/span><\/em>, the causal agent of the poplar leaf rust. 22nd New Phytologist Symposium, Versailles, France, September <\/span>2009<\/span><\/strong> (<\/span>invited speaker<\/span><\/strong>)<\/span><\/p>\n

\u2022 <\/span>DUPLESSIS S.<\/span><\/strong> Analyse mol\u00e9culaire du s\u00e9cr\u00e9tome de <\/span>Melampsora larici-populina<\/span><\/em>, agent de la rouille foliaire du peuplier, et de Laccaria bicolor, symbiote ectomycrorhizien du peuplier. 7\u00e8me colloque national de la Soci\u00e9t\u00e9 Fran\u00e7aise de Phytopathologie. Lyon, France, June <\/span>2009<\/span><\/strong> (<\/span>invited speaker <\/span><\/strong>of session \u2018th\u00e8mes \u00e9mergents en phytopathologie et interactions plantes-microorganismes)<\/span><\/p>\n

\u2022 <\/span>DUPLESSIS S.<\/span><\/strong> G\u00e9nomique des interactions arbres-champignons biotrophes : recherche de marqueurs mol\u00e9culaires des r\u00e9sistance qualitative et quantitative \u00e0 <\/span>Melampsora larici-populina <\/span><\/em>chez le peuplier par des approches globales. IPMSV, INRA Antibes, France, May <\/span>2008 <\/span><\/strong>(<\/span>seminar on invitation<\/span><\/strong>)<\/span><\/p>\n

\u2022 <\/span>DUPLESSIS S<\/span><\/strong>. The genome sequence of <\/span>Melampsora larici-populina<\/span><\/em>, the causal agent of the poplar rust disease. Basidio3 workshop on basidiomycete whole-genome sequences, Edinburgh, UK, april <\/span>2008 (<\/span><\/span>Speaker<\/span><\/strong>)<\/span>.<\/span><\/span><\/span><\/strong><\/p>\n

\u2022 <\/span>DUPLESSIS S<\/span><\/strong>, HACQUARD S, TICE H, DALIN H, LUCAS S, SHAPIRO H, PANGILINAN J, SCHMUTZ J, OUDOT-LE SECQ M-P, FREY P, RICHARDSON P, MARTIN F, Genome-wide analysis of secreted proteins encoding genes in <\/span>Melampsora larici-populina<\/span><\/em>, the causal agent of the poplar foliar rust disease. ECFG9, 9th European Conference on Fungal Genetics, Edinburgh, UK, april <\/span>2008<\/span><\/strong> (<\/span>poster<\/span><\/strong>)<\/span><\/p>\n

\u2022 <\/span>DUPLESSIS S<\/span><\/strong>, RINALDI C, KOHLER A, FREY P, LALANNE C, JORGE V, DOWKIW A, GU\u00c9RIN V, FAIVRE-RAMPANT P, BRESSON A, PAOLUCCI I, PLOMION C, BASTIEN C, MARTIN F. Recherche de marqueurs mol\u00e9culaires des r\u00e9sistances qualitative et quantitative \u00e0 <\/span>Melampsora larici-populina<\/span><\/em> chez le peuplier par des approches globales. Journ\u00e9es Jean Chevaugeon. 7\u00e8me Rencontres de Phytopathologie\/Mycologie de la SFP, Aussois, France, January <\/span>2008 <\/span><\/strong>(<\/span>invited speaker<\/span><\/strong>)<\/span><\/p>\n

\u2022 <\/span>DUPLESSIS S<\/span><\/strong>. The sequencing of the Populus community genome for a better understanding of the tree-microbe interactions. Talca University, Chile, November <\/span>2007<\/span><\/strong> (<\/span>seminar on invitation<\/span><\/strong>).<\/span><\/p>\n

\u2022 <\/span>DUPLESSIS S<\/span><\/strong>. The sequencing of the <\/span>Populus <\/span><\/em>community genome for a better understanding of the tree-microbe interactions. 2nd UPRA Meeting, Umea, Sweden, October <\/span>2007 <\/span><\/strong>(<\/span>invited speaker<\/span><\/strong>).<\/span><\/p>\n

\u2022 <\/span>DUPLESSIS S<\/span><\/strong>. Genomics of Tree-Microbe Interactions: genome sequencing, annotation & transcriptomics. Journ\u00e9es de bioinformatique du LORIA, Nancy, France, France, September <\/span>2007 (<\/span><\/span>Speaker<\/span><\/strong>)<\/span>.<\/span><\/span><\/span><\/strong><\/p>\n

\u2022 <\/span>DUPLESSIS S <\/span><\/strong>Genomics of the interaction between Populus and the poplar leaf rust, <\/span>Melampsora larici-populina<\/span><\/em>. Uppsala University, Sweden, April <\/span>2007 <\/span><\/strong>(<\/span>seminar on invitation<\/span><\/strong>).<\/span><\/p>\n

\u2022 <\/span>DUPLESSIS S<\/span><\/strong>, LACCARIA GENOME CONSORTIUM, JOINT GENOME INSTITUTE. Annotation of signaling pathways genes families in the ectomycorrhizal basidiomycete <\/span>Laccaria bicolor <\/span><\/em>reveals an expansion of a G-proteins encoding genes family. Fungal Genetics Conferences, Asilomar, CA, USA, March <\/span>2007 <\/span><\/strong>(<\/span>speaker<\/span><\/strong>).<\/span><\/p>\n

\u2022 <\/span>DUPLESSIS S<\/span><\/strong>, JAIN P, GROSDEMANDE A, DUCHAUSSOY F, MURATET M, PODILA G, MARTIN F. Annotation of signalling pathways genes families in the ectomycorrhizal basidiomycete <\/span>Laccaria bicolor<\/span><\/em>reveals an expansion of a G-proteins encoding genes family. IXth International Fungal Biology Conference & 16th New Phytologist Symposium, Nancy, France, September <\/span>2006 <\/span><\/strong>(<\/span>poster<\/span><\/strong>)<\/span><\/p>\n

\u2022 <\/span>KOHLER A, PEREDA V, <\/span>DUPLESSIS S<\/span><\/strong>, MARTIN F. Transcript patterns associated with ectomycorrhiza formation in poplar. 5th International Conference On Mycorrhiza, Granada, Spain, July <\/span>2006 <\/span><\/strong>(<\/span>invited speaker<\/span><\/strong>).<\/span><\/p>\n

\u2022 <\/span>DUPLESSIS S<\/span><\/strong>, KOHLER A, RINALDI C, FREY P, MARTIN F. Dissecting the early molecular events in poplar leaves upon interaction with rust. XL annual meeting of the Argentine Society for Biochemistry and Molecular Biology. Iguazu, Missiones, Argentina, December <\/span>2004 <\/span><\/strong>(<\/span>Poster<\/span><\/strong>).<\/span><\/p>\n

\u2022 <\/span>DUPLESSIS S<\/span><\/strong>, KOHLER A, RINALDI C, FREY P, MARTIN F. Characterization of the early response of poplar to rust infection using expression profiling. 12th New Phytologist Symposium on Functional Genomics of Environmental Adaptation in <\/span>Populus<\/span><\/em>. Gatlinburg TE, USA, October <\/span>2004 <\/span><\/strong>(<\/span>invited speaker<\/span><\/strong>).<\/span><\/p>\n

\u2022 <\/span>RINALDI C, KOHLER A, <\/span>DUPLESSIS S<\/span><\/strong>, FREY P, MARTIN F. Isolation and expression of a host- response gene family encoding thaumatin-like proteins in incompatible poplar-rust fungus interaction. 12th New Phytologist Symposium on Functional Genomics of Environmental Adaptation in <\/span>Populus<\/span><\/em>. Gatlinburg TE, USA, October <\/span>2004 <\/span><\/strong>(<\/span>Poster<\/span><\/strong>).<\/span><\/p>\n

\u2022 <\/span>DUPLESSIS S<\/span><\/strong>. L\u2019apport de la bioinformatique pour l\u2019\u00e9tude des interactions entre les arbres et les micro-organismes. 2\u00e8me journ\u00e9e de conf\u00e9rence de l\u2019association DGIN, Universit\u00e9 Henri Poincar\u00e9, Nancy, France, September <\/span>2004 <\/span><\/strong>(<\/span>speaker<\/span><\/strong>).<\/span><\/p>\n

\u2022 <\/span>DUPLESSIS S<\/span><\/strong>. Exploring the transcriptome of the ectomycorrhizal symbiosis. Gordon Research Conferences on Cellular and Molecular Fungal Biology. Plymouth NH, USA, June <\/span>2004 <\/span><\/strong>(<\/span>invited speaker<\/span><\/strong>).<\/span><\/p>\n

\u2022 <\/span>DUPLESSIS S<\/span><\/strong>. Transcriptome studies of tree\/fungi interactions: transcriptome analysis of symbiotic and pathogenic interactions in forest trees. Uppsala University, Sweden, September <\/span>2003 <\/span><\/strong>(<\/span>seminar on invitation<\/span><\/strong>).<\/span><\/p>\n

\u2022 <\/span>DUPLESSIS S<\/span><\/strong>, KOHLER A, ROUHIER N, FREY P, JACQUOT J-P, MARTIN F. Gene expression profiling in poplar leaves upon infection with rust. IUFRO Tree Biotechnology Meeting, Umea, Sweden, June<\/span> 2003 <\/span><\/strong>(<\/span>invited speaker<\/span><\/strong>).<\/span><\/p>\n

\u2022 <\/span>DUPLESSIS S<\/span><\/strong>, COURTY P-E, TAGU D, MARTIN F. Analyse du transcriptome de <\/span>Pisolithus microcarpus<\/span><\/em>et d’<\/span>Eucalyptus globulus<\/span><\/em> au cours du d\u00e9veloppement de la symbiose ectomycorhizienne. S\u00e9minaire annuel du Groupe d\u2019Etude de l\u2019Arbre \u2018R\u00e9action de l’arbre aux symbioses, parasites et ravageurs\u2019, Nancy, France, May<\/span> 2003 <\/span><\/strong>(<\/span>speaker<\/span><\/strong>).<\/span><\/p>\n

\u2022 <\/span>DUPLESSIS S<\/span><\/strong>. Caract\u00e9risation des profils d’expression g\u00e9nique de <\/span>Pisolithus microcarpus <\/span><\/em>et d’<\/span>Eucalyptus globulus<\/span><\/em> au cours du d\u00e9veloppement de la symbiose ectomycorhizienne par une approche de g\u00e9nomique fonctionnelle : principes et limites des techniques mises en jeu, UPRES-EA 3569, Universit\u00e9 de Lille, France, April <\/span>2003 <\/span><\/strong>(<\/span>seminar on invitation<\/span><\/strong>).<\/span><\/p>\n

\u2022 <\/span>DUPLESSIS S<\/span><\/strong>, COURTY P-E, TAGU D, MARTIN F. Analyse du transcriptome de <\/span>Pisolithus microcarpus<\/span><\/em>et d’<\/span>Eucalyptus globulus <\/span><\/em>au cours du d\u00e9veloppement de la symbiose ectomycorhizienne. Journ\u00e9es du r\u00e9seau de mycologie, Soci\u00e9t\u00e9 Fran\u00e7aise de Microbiologie, Nancy, France, January <\/span>2003<\/span><\/strong>(<\/span>speaker<\/span><\/strong>).<\/span><\/span><\/span><\/p>\n

\u2022 <\/span>DUPLESSIS S<\/span><\/strong>, COURTY P-E, TAGU D, MARTIN F. Transcriptome profiling indicates that multiple metabolic pathways are activated during the development of the <\/span>Eucalyptus\/Pisolithus <\/span><\/em>ectomycorrhiza. 10th New Phytologist Symposium, Functional Genomics of Plant-Microbe Interactions, Nancy, France, October <\/span>2002<\/span><\/strong> (<\/span>invited speaker<\/span><\/strong>).<\/span><\/p>\n

\u2022 <\/span>DUPLESSIS S<\/span><\/strong>, ROUHIER N, FREY P, KOHLER A, JACQUOT J-P, MARTIN F. Analyse du transcriptome du pathosyst\u00e8me <\/span>Populus x interamericana \/ Melampsora larici-populina<\/span><\/em>. JJC, IV\u00e8me Rencontres de Mycologie-Phytopathologie, Aussois, France, March <\/span>2002 <\/span><\/strong>(<\/span>speaker<\/span><\/strong>).<\/span><\/p>\n

\u2022 <\/span>DUPLESSIS S<\/span><\/strong>, MARTIN F. Monitoring <\/span>Eucalyptus globulus<\/span><\/em> and <\/span>Pisolithus tinctorius<\/span><\/em> gene expression during the ectomycorrhizal symbiosis development using cDNA arrays and cluster analysis. Wood, Breeding, Biotechnology and industrial expectation, Bordeaux, France, June <\/span>2001 <\/span><\/strong>(<\/span>poster<\/span><\/strong>).<\/span><\/p>\n

\u2022 <\/span>DUPLESSIS S<\/span><\/strong>. Caract\u00e9risation par ing\u00e9nierie g\u00e9nomique des profils d’expression g\u00e9nique de <\/span>Pisolithus tinctorius <\/span><\/em>et d’<\/span>Eucalyptus globulus<\/span><\/em> au cours du d\u00e9veloppement de la symbiose ectomycorhizienne. Laboratoire de g\u00e9n\u00e9tique, Pierroteon, May <\/span>2001 <\/span><\/strong>(<\/span>seminar on invitation<\/span><\/strong>).<\/span><\/p>\n

\u2022 <\/span>DUPLESSIS S<\/span><\/strong>, VOIBLET C, MARTIN F. Monitoring differential gene expression in <\/span>Eucalyptus globulus-Pisolithus tinctorius <\/span><\/em>ectomycorrhiza using cDNA arrays. Fifth European Conference on Fungal Genetics, Arcachon, France, April <\/span>2000<\/span><\/strong> (<\/span>poster<\/span><\/strong>).<\/span><\/p>\n

\u2022 <\/span>DUPLESSIS S<\/span><\/strong>, VOIBLET C, MARTIN F. Caract\u00e9risation et \u00e9tude de l\u2019expression de g\u00e8nes des voies de transduction du champignon ectomycorhizien <\/span>Pisolithus tinctorius<\/span><\/em>. JJC, III\u00e8me Rencontres de Mycologie-Phytopathologie, Aussois, France, March<\/span> 2000<\/span><\/strong> (<\/span>speaker<\/span><\/strong>).<\/span><\/p>\n

\u2022 <\/span>DUPLESSIS S<\/span><\/strong>, VOIBLET C, TAGU D, MARTIN F. ESTs et Filtres d\u2019ADNc : Des m\u00e9thodologies permettant d\u2019\u00e9tudier le transcriptome de la symbiose ectomycorhizienne. 5\u00e8me Rencontres BMol\u00e9culaire des Ligneux, Montpellier, France, October <\/span>1999 <\/span><\/strong>(<\/span>speaker<\/span><\/strong>).<\/span><\/p>\n","protected":false},"excerpt":{"rendered":"

INRAE ECODIV Division Ecology & Biodiversity Chief of the ECODIV Division INRAE Centre Grand-Est, Nancy       Bio: BSc in Biology at Bordeaux University (1995). MSc in Cell Biology and Physiology (1998) and PhD in Plant and Forest Sciences … Continue reading →<\/span><\/a><\/p>\n","protected":false},"author":2,"featured_media":0,"parent":853,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-706","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/mycor.iam.inrae.fr\/IAM\/index.php?rest_route=\/wp\/v2\/pages\/706","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/mycor.iam.inrae.fr\/IAM\/index.php?rest_route=\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/mycor.iam.inrae.fr\/IAM\/index.php?rest_route=\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/mycor.iam.inrae.fr\/IAM\/index.php?rest_route=\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/mycor.iam.inrae.fr\/IAM\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=706"}],"version-history":[{"count":30,"href":"https:\/\/mycor.iam.inrae.fr\/IAM\/index.php?rest_route=\/wp\/v2\/pages\/706\/revisions"}],"predecessor-version":[{"id":13312,"href":"https:\/\/mycor.iam.inrae.fr\/IAM\/index.php?rest_route=\/wp\/v2\/pages\/706\/revisions\/13312"}],"up":[{"embeddable":true,"href":"https:\/\/mycor.iam.inrae.fr\/IAM\/index.php?rest_route=\/wp\/v2\/pages\/853"}],"wp:attachment":[{"href":"https:\/\/mycor.iam.inrae.fr\/IAM\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=706"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}

\u2022 ABDALRAHEM A, ANDRIEUX A, BECHELER R, DUPLESSIS S,<\/strong> FREY P, MARCAIS B, STOECKEL S, HALKETT F (2025<\/strong>) Long-lasting co-existence of multiple asexual lineages alongside their sexual counterparts in a fungal plant pathogen.\u00a0Submitted<\/strong> April 2025. Available as a BioRxiv. doi: 10.1101\/2025.03.28.645883<\/a>.<\/span><\/em><\/p>\n