{"id":8525,"date":"2018-01-16T15:54:21","date_gmt":"2018-01-16T15:54:21","guid":{"rendered":"https:\/\/mycor.iam.inrae.fr\/IAM\/?page_id=8525"},"modified":"2022-02-24T10:59:46","modified_gmt":"2022-02-24T10:59:46","slug":"publications-2018","status":"publish","type":"page","link":"https:\/\/mycor.iam.inrae.fr\/IAM\/?page_id=8525","title":{"rendered":"Publications 2018"},"content":{"rendered":"
    \n
  1. Comparative genomics and transcriptomics depict ericoid mycorrhizal fungi as versatile saprotrophs and plant mutualists.\u00a0<\/a>E Martino, E Morin, GA Grelet, A Kuo, A Kohler, S Daghino, KW Barry, …\u00a0New Phytologist<\/li>\n
  2. Secretome analysis from the ectomycorrhizal ascomycete Cenococcum geophilum\u00a0<\/a>MDF Pereira, C Veneault-Fourrey, P Vion, F Guinet, E Morin, K Barry, … Frontiers in Microbiology 9, 141<\/li>\n
  3. Roles and maturation of iron\u2013sulfur proteins in plastids\u00a0<\/a>J Przybyla-Toscano, M Roland, F Gaymard, J Couturier, N Rouhier JBIC Journal of Biological Inorganic Chemistry, 1-21<\/li>\n
  4. High intraspecific genome diversity in the model arbuscular mycorrhizal symbiont Rhizophagus irregularis\u00a0<\/a>ECH Chen, E Morin, D Beaudet, J Noel, G Yildirir, S Ndikumana, … New Phytologist<\/li>\n
  5. The rust fungus Melampsora larici-populina expresses a conserved genetic program and distinct sets of secreted protein genes during infection of its two host plants,…<\/a>C Lorrain, C Marchal, S Hacquard, C Delaruelle, J P\u00e9trowski, B Petre, …Molecular Plant-Microbe Interactions<\/li>\n
  6. Function and maturation of the Fe\u2013S center in dihydroxyacid dehydratase from Arabidopsis\u00a0<\/a>H Gao, T Azam, S Randeniya, J Couturier, N Rouhier, MK Johnson. Journal of Biological Chemistry, jbc. RA117. 001592<\/li>\n
  7. Genome-Wide Analysis of Corynespora cassiicola Leaf Fall Disease Putative Effectors.\u00a0<\/a>D Lopez, S Ribeiro, P Label, B Fumanal, JS Venisse, A Kohler, … Frontiers in Microbiology 9, 276<\/li>\n
  8. Enzyme activities of two recombinant heme-including peroxidases TvDyP1 and TvVP2 identified from the secretome of Trametes versicolor\u00a0<\/a>S Amara, T Perrot, D Navarro, A Deroy, A Benkhelfallah, A Chalak, …\u00a0Applied and Environmental Microbiology, AEM. 02826-17<\/li>\n
  9. Bacterial-Fungal Interactions: ecology, mechanisms and challenges\u00a0<\/a>A Deveau, G Bonito, J Uehling, M Paoletti, M Becker, S Bindschedler, … FEMS microbiology reviews Microbiology ecology<\/li>\n
  10. Show me the way: rust effector targets in heterologous plant systems.\u00a0<\/a>C Lorrain, B Petre, S Duplessis.\u00a0Current opinion in microbiology 46, 19-25<\/li>\n
  11. Tracking the invasion: dispersal of Hymenoscyphus fraxineus airborne inoculum at different scales<\/a>. M Grosdidier, R Ioos, C Husson, O Cael, T Scordia\u2026 FEMS Microbiology Ecology.<\/li>\n
  12. Structural snapshots along the reaction mechanism of the atypical poplar thioredoxin\u2010like2. 1\u00a0<\/a>K Chibani, F Saul, C Didierjean, N Rouhier, A Haouz FEBS letters<\/li>\n
  13. Comparison of teak wood properties according to forest management: short versus long rotation\u00a0<\/a>DE Rizanti, W Darmawan, B George, A Merlin, S Dumarcay, H Chapuis, … Annals of Forest Science 75 (2), 39<\/li>\n
  14. Assessing airborne fungal communities by high-throughput sequencing using passive traps\u00a0<\/a>J Aguayo, C Fourrier-Jeandel, C Husson, R Ioos. Applied and Environmental Microbiology, AEM. 02637-17<\/li>\n
  15. Do higher summer temperatures restrict the dissemination of Hymenoscyphus fraxineus in France?\u00a0<\/a>M Grosdidier, R Ioos, B Mar\u00e7ais. Forest Pathology<\/li>\n
  16. The origin and evolution of mycorrhizal symbioses: from palaeomycology to phylogenomics.\u00a0<\/a>C Strullu-Derrien, MA Selosse, P Kenrick, FM Martin The New phytologist<\/li>\n
  17. Impact of soil pedogenesis on the diversity and composition of fungal communities across the California soil chronosequence of Mendocino\u00a0<\/a>PE Courty, M Bu\u00e9e, JJT Tech, D Brul\u00e9, Y Colin, JHJ Leveau, S Uroz Mycorrhiza, 1-14<\/li>\n
  18. Intraspecific comparative genomics of isolates of the Norway spruce pathogen (Heterobasidion parviporum) and identification of its potential virulence factors\u00a0<\/a>Z Zeng, H Sun, EJ Vainio, T Raffaello, A Kovalchuk, E Morin, S Duplessis, … BMC genomics 19 (1), 220<\/li>\n
  19. The ectomycorrhizal basidiomycete Laccaria bicolor releases a secreted \u03b2-1, 4 endoglucanase that plays a key role in symbiosis development.\u00a0<\/a>F Zhang, GE Anasontzis, A Labourel, C Champion, M Haon, … The New phytologist<\/li>\n
  20. N-Acetylglucosaminidase activity, a functional trait of chitin degradation, is regulated differentially within two orders of ectomycorrhizal fungi: Boletales and Agaricales<\/a>\u00a0F Maillard, M Didion, L Fauchery, C Bach, M Bu\u00e9e.\u00a0Mycorrhiza, 1-7<\/li>\n
  21. \n
    The ash dieback invasion of Europe was founded by two genetically divergent individuals\u00a0<\/a>M McMullan, M Rafiqi, G Kaithakottil, BJ Clavijo, L Bilham, E Orton, …Nature Ecology & Evolution, 1<\/div>\n<\/li>\n
  22. First Report of Phytophthora ramorum causing Japanese Larch dieback in France\u00a0<\/a>N Schenck, C Saurat, C Guinet, C Fourrier-Jeandel, L Roche, A Bouvet, …\u00a0Plant Disease<\/li>\n
  23. The Hydrophobin-Like OmSSP1 May Be an Effector in the Ericoid Mycorrhizal Symbiosis<\/a>. S\u00a0Casarrubia, S\u00a0Daghino, A Kohler, E Morin, HR Khouja, C Venault-Fourrey,… Front. Plant Sci., 01 May 2018 |<\/li>\n
  24. Assessment of Passive Traps Combined with High-Throughput Sequencing To Study Airborne Fungal Communities\u00a0<\/a>J Aguayo, C Fourrier-Jeandel, C Husson, R Ioos. Applied and Environmental Microbiology 84 (11), e02637-17<\/li>\n
  25. Ericoid mycorrhizal fungi and their genomes: another side to the mycorrhizal symbiosis?<\/a>\u00a0S Perotto, S Daghino, E Martino.\u00a0The New phytologist.\u00a0https:\/\/doi.org\/10.1111\/nph.15218<\/a><\/li>\n
  26. Molecular recognition of wood polyphenols by phase II detoxification enzymes of the white rot Trametes versicolor\u00a0<\/a>M Schwartz, T Perrot, E Aubert, S Dumar\u00e7ay, F Favier, P G\u00e9rardin, …Scientific Reports 8 (1), 8472<\/li>\n
  27. Purification of Fungal High Molecular Weight Genomic DNA from Environmental Samples.\u00a0<\/a>L Fauchery, S Uroz, M Bu\u00e9e, A Kohler. Fungal Genomics, 21-35<\/li>\n
  28. Conserved functions of Arabidopsis mitochondrial late-acting maturation factors in the trafficking of iron\u2011sulfur clusters\u00a0<\/a>MA Uzarska, J Przybyla-Toscano, F Spangar, F Zannini, R Lill, …Biochimica et Biophysica Acta (BBA)-Molecular Cell Research<\/li>\n
  29. Oak genome reveals facets of long lifespan\u00a0<\/a>C Plomion, JM Aury, J Amselem, T Leroy, F Murat, S Duplessis, S Faye, …Nature Plants, 1<\/li>\n
  30. Draft Genome Sequence of Tuber borchii Vittad., a Whitish Edible Truffle\u00a0<\/a>C Murat, A Kuo, KW Barry, A Clum, RB Dockter, L Fauchery, M Iotti, … Genome Announcements 6 (25), e00537-18<\/li>\n
  31. Tree genotype and seasonal effects on soil properties and biogeochemical functioning in Mediterranean pine forests. <\/a>L P\u00e9rez\u2010Izquierdo, L Saint\u2010Andr\u00e9, P Santenoise\u2026\u00a0– European Journal of Soil Science<\/li>\n
  32. Multi-omic analyses of extensively decayed Pinus contorta reveal expression of diverse array of lignocellulose degrading enzymes\u00a0<\/a>C Hori, J Gaskell, D Cullen, G Sabat, PE Stewart, K Lail, Y Peng, K Barry, … Applied and environmental microbiology, AEM. 01133-18<\/li>\n
  33. Trametes versicolor<\/i> Glutathione Transferase Xi 3, a dual Cys\u2010GST with catalytic specificities of both Xi and Omega classes\u00a0<\/a>M Schwartz, T Perrot, A Deroy, T Roret, M Morel\u2010Rouhier, G Mulliert, … FEBS letters<\/li>\n
  34. Impact of soil chemistry, nutrient supplements, and fungicides on the health and yield of field-grown processing tomatoes\u00a0<\/a>NN Maharaj, EM Miyao, RM Davis, S Uroz, JHJ Leveau. European Journal of Plant Pathology, 1-14<\/li>\n
  35. Fungal glutathione transferases as tools to explore the chemical diversity of Amazonian wood extractives\u00a0<\/a>T Perrot, mathieu Schwartz, F Saiag, G Salzet, S Dumarcay, F Favier, … ACS Sustainable Chemistry & Engineering<\/li>\n
  36. Dark deactivation of chloroplast enzymes finally comes to light<\/a>. JP Jacquot. P.\u00a0Proceedings of the National Academy of Sciences<\/li>\n
  37. From leaf to continent: The multi-scale distribution of an invasive cryptic pathogen complex on oak\u00a0<\/a>ML Desprez-Loustau, M Massot, M To\u00efgo, T Fort, AGA Kaya, J Boberg, …Fungal Ecology 36, 39-50<\/li>\n
  38. Oak extractive\u2010induced stress reveals the involvement of new enzymes in the early detoxification response of Phanerochaete chrysosporium\u00a0<\/i><\/a>AJ Fern\u00e1ndez\u2010Gonz\u00e1lez, N Valette, A Kohler, S Dumar\u00e7ay, R Sormani, … Environmental microbiology<\/li>\n
  39. \n
    A rust fungal effector binds plant DNA and modulates transcription\u00a0<\/a>MB Ahmed, KCG dos Santos, IB Sanchez, B Petre, C Lorrain, MB Plourde, …\u00a0Scientific Reports 8 (1), 14718<\/div>\n<\/li>\n
  40. \n
    Phytophthora ramorum, first record on Japanese larch in France.\u00a0<\/a>M Goudet, C Husson, FX Saintonge, X Greni\u00e9, L Roche.\u00a0For\u00eat-Entreprise, 62-65<\/div>\n<\/li>\n
  41. \n
    Mitochondrial Arabidopsis thaliana TRXo Isoforms Bind an Iron\u2013Sulfur Cluster and Reduce NFU Proteins In Vitro.\u00a0<\/a>F Zannini, T Roret, J Przybyla-Toscano, T Dhalleine, N Rouhier, …Antioxidants 7 (10), 142<\/div>\n<\/li>\n
  42. \n
    Aboveground overyielding in a mixed temperate forest is not explained by belowground processes\u00a0<\/a>A Fruleux, MB Bogeat-Triboulot, C Collet, A Deveau, L Saint-Andr\u00e9, …\u00a0Oecologia, 1-11<\/div>\n<\/li>\n
  43. \n
    Pezizomycetes genomes reveal the molecular basis of ectomycorrhizal truffle lifestyle<\/a>\u00a0C Murat, T Payen, B Noel, A Kuo, E Morin, J Chen, A Kohler, K Krizs\u00e1n, …\u00a0Nature Ecology & Evolution, 1<\/div>\n<\/li>\n
  44. Climate change induced drought impacts on plant diseases in New Zealand. Australasian.<\/a> Wakelin S., Gomez-Gallego M., Jones E., Smaill S:, Lear G., Lambie, S. (2018).\u00a0 Plant Pathology, 47(1): 101-114. DOI: https:\/\/doi.org\/10.1007\/s13313-018-0541-4<\/a>. R\u00e9f. HAL:\u00a0hal-03220685<\/a><\/li>\n
  45. Facing global change : the millennium challenge for plant scientists.\u00a0<\/a>Basso, V., de Freitas Pereira, M., Maillard, F., Mallerman, J., Mangeot-Peter, L., Zhang, F., & Bonnot, C. (2018). New Phytologist<\/i>,\u00a0220<\/i>(1), 25\u201129. https:\/\/doi.org\/10.1111\/nph.15376<\/a><\/li>\n
  46. Both gravistimulation onset and removal trigger an increase of cytoplasmic free calcium in statocytes of roots grown in microgravity.\u00a0<\/a>Bizet, F., Pereda-Loth, V., Chauvet, H., G\u00e9rard, J., Eche, B., Girousse, C., Courtade, M., Perbal, G., & Legu\u00e9, V. (2018). Scientific Reports<\/i>,\u00a08<\/i>(1). https:\/\/doi.org\/10.1038\/s41598-018-29788-7<\/a><\/li>\n
  47. FROGS : Find, Rapidly, OTUs with Galaxy Solution.\u00a0<\/a>Escudi\u00e9, F., Auer, L., Bernard, M., Mariadassou, M., Cauquil, L., Vidal, K., Maman, S., Hernandez-Raquet, G., Combes, S., & Pascal, G. (2017). Bioinformatics<\/i>,\u00a034<\/i>(8), 1287\u20111294. https:\/\/doi.org\/10.1093\/bioinformatics\/btx791<\/a><\/li>\n
  48. La recherche participative CiTIQUE.\u00a0<\/a>Frey-Klett, P., Brun-Jacob, A., Marchand, J., Boniface, P., Ortmans, C., Salvat, G., Armand, J. M., & Cosson, J. F. (2018). Revue Foresti\u00e8re Fran\u00e7aise<\/i>,\u00a02-3\u20114<\/i>, 205. https:\/\/doi.org\/10.4267\/2042\/69997<\/a><\/li>\n
  49. \n
    Impact of agricultural practices and environmental variables on plant-parasitic nematode communities in fields at a landscape scale.<\/a> <\/label><\/label>Garcia, N., Folcher, L., Biju-Duval, L., Maupetit, A., Ricci, B., & Grenier, E. (2018). Nematology<\/i>,\u00a020<\/i>(3), 211\u2011233. https:\/\/doi.org\/10.1163\/15685411-00003136<\/a><\/label><\/label><\/div>\n<\/li>\n
  50. \n
    Correction : The Sulfated Laminarin Triggers a Stress Transcriptome before Priming the SA- and ROS-Dependent Defenses during Grapevine\u2019s Induced Resistance against Plasmopara viticola.<\/a> <\/label><\/label>Gauthier, A., Trouvelot, S., Kelloniemi, J., Frettinger, P., Wendehenne, D., Daire, X., Joubert, J. M., Ferrarini, A., Delledonne, M., Flors, V., & Poinssot, B. (2018). PLOS ONE<\/i>,\u00a013<\/i>(3), e0194327. https:\/\/doi.org\/10.1371\/journal.pone.0194327<\/a><\/label><\/label><\/div>\n<\/li>\n
  51. \n
    Infection assays in Arabidopsis reveal candidate effectors from the poplar rust fungus that promote susceptibility to bacteria and oomycete pathogens.<\/a> <\/label><\/label>Germain, H., Joly, D. L., Mireault, C., Plourde, M. B., Letanneur, C., Stewart, D., Morency, M. J., Petre, B., Duplessis, S., & S\u00e9guin, A. (2017).Molecular Plant Pathology<\/i>,\u00a019<\/i>(1), 191\u2011200. https:\/\/doi.org\/10.1111\/mpp.12514<\/a><\/label><\/label><\/div>\n<\/li>\n
  52. \n
    Bacterial biofilm formation on the hyphae of ectomycorrhizal fungi : a widespread ability under controls ?<\/a><\/label><\/label> Miquel Guennoc, C., Rose, C., Labb\u00e9, J., & Deveau, A. (2018).\u00a0FEMS Microbiology Ecology<\/i>,\u00a094<\/i>(7). https:\/\/doi.org\/10.1093\/femsec\/fiy093<\/a><\/label><\/label><\/div>\n<\/li>\n
  53. Russulaceae : a new genomic dataset to study ecosystem function and evolutionary diversification of ectomycorrhizal fungi with their tree associates.\u00a0<\/a>Looney, B. P., Meidl, P., Piatek, M. J., Miettinen, O., Martin, F. M., Matheny, P. B., & Labb\u00e9, J. L. (2018). New Phytologist<\/i>,\u00a0218<\/i>(1), 54\u201165. https:\/\/doi.org\/10.1111\/nph.15001<\/a><\/li>\n
  54. Transcriptomic response of Debaryomyces hansenii during mixed culture in a liquid model cheese medium with Yarrowia lipolytica.\u00a0<\/a>Malek, R., Bonnarme, P., Irlinger, F., Frey-Klett, P., On\u00e9sime, D., Aubert, J., Loux, V., & Beckerich, J. M. (2018). International Journal of Food Microbiology<\/i>,\u00a0264<\/i>, 53\u201162. https:\/\/doi.org\/10.1016\/j.ijfoodmicro.2017.10.026<\/a><\/li>\n
  55. Cross-scale integration of mycorrhizal function.\u00a0<\/a>Martin, F. M., Harrison, M. J., Lennon, S., Lindahl, B., \u00d6pik, M., Polle, A., Requena, N., & Selosse, M. A. (2018). New Phytologist<\/i>,\u00a0220<\/i>(4), 941\u2011946. https:\/\/doi.org\/10.1111\/nph.15493<\/a><\/li>\n
  56. Defense Compounds Rather Than Nutrient Availability Shape Aggressiveness Trait Variation Along a Leaf Maturity Gradient in a Biotrophic Plant Pathogen.<\/a> Maupetit, A., Larbat, R., Pernaci, M., Andrieux, A., Guinet, C., Boutigny, A. L., Fabre, B., Frey, P., & Halkett, F. (2018).\u00a0Frontiers in Plant Science<\/i>,\u00a09<\/i>. https:\/\/doi.org\/10.3389\/fpls.2018.01396<\/a><\/li>\n
  57. Physico-chemical characterization of a milk-clotting fraction extracted from turkey (Meleagris gallopavo) proventriculus.\u00a0<\/a>Mekhaneg, B., Girardet, J. M., Humbert, G., Saulnier, F., Poirson, C., & Bellal, M. M. (2018). Innovative Food Science & Emerging Technologies<\/i>,\u00a048<\/i>, 172\u2011178. https:\/\/doi.org\/10.1016\/j.ifset.2018.06.006<\/a><\/li>\n
  58. Integrative visual omics of the white-rot fungus Polyporus brumalis exposes the biotechnological potential of its oxidative enzymes for delignifying raw plant biomass.\u00a0<\/a>Miyauchi, S., Rancon, A., Drula, E., Hage, H., Chaduli, D., Favel, A., Grisel, S., Henrissat, B., Herpo\u00ebl-Gimbert, I., Ruiz-Due\u00f1as, F. J., Chevret, D., Hainaut, M., Lin, J., Wang, M., Pangilinan, J., Lipzen, A., Lesage-Meessen, L., Navarro, D., Riley, R.,. . . Rosso, M. N. (2018). Biotechnology for Biofuels<\/i>,\u00a011<\/i>(1). https:\/\/doi.org\/10.1186\/s13068-018-1198-5<\/a><\/li>\n
  59. The involvement of calmodulin and protein kinases in the upstream of cytosolic and nucleic calcium signaling induced by hypoosmotic shock in tobacco cells.\u00a0<\/a>Nguyen, H. T. H., Bouteau, F., Mazars, C., Kuse, M., & Kawano, T. (2018). Plant Signaling & Behavior<\/i>, 1\u20117. https:\/\/doi.org\/10.1080\/15592324.2018.1494467<\/a><\/li>\n
  60. Know your enemy, embrace your friend : using omics to understand how plants respond differently to pathogenic and mutualistic microorganisms.<\/a> Plett, J. M., & Martin, F. M. (2018). \u00a0The Plant Journal<\/i>,\u00a093<\/i>(4), 729\u2011746. https:\/\/doi.org\/10.1111\/tpj.13802<\/a><\/li>\n
  61. Pourquoi et comment contr\u00f4ler les maladies des arbres forestiers en p\u00e9pini\u00e8res (Synth\u00e8se de l\u2019atelier).<\/a>\u00a0Robin, C., & Husson, C. (2018). Revue foresti\u00e8re fran\u00e7aise<\/i>,\u00a070<\/i>(6), 683\u2013690. https:\/\/doi.org\/10.4267\/2042\/70323<\/a><\/li>\n
  62. Mycorrhizal microbiomes.\u00a0<\/a>Tarkka, M. T., Drigo, B., & Deveau, A. (2018). Mycorrhiza<\/i>,\u00a028<\/i>(5\u20116), 403\u2011409. https:\/\/doi.org\/10.1007\/s00572-018-0865-5<\/a><\/li>\n
  63. The genomic tool-kit of the truffle Tuber melanosporum programmed cell death.\u00a0<\/a>Zarivi, O., Cesare, P., Poma, A. M., Colafarina, S., Bonfigli, A., Kohler, A., Aimola, P., Ragnelli, A. M., Pacioni, G., & Miranda, M. (2018). Cell Death Discovery<\/i>,\u00a04<\/i>(1). https:\/\/doi.org\/10.1038\/s41420-017-0019-0<\/a><\/li>\n<\/ol>\n","protected":false},"excerpt":{"rendered":"

    Comparative genomics and transcriptomics depict ericoid mycorrhizal fungi as versatile saprotrophs and plant mutualists.\u00a0E Martino, E Morin, GA Grelet, A Kuo, A Kohler, S Daghino, KW Barry, …\u00a0New Phytologist Secretome analysis from the ectomycorrhizal ascomycete Cenococcum geophilum\u00a0MDF Pereira, C Veneault-Fourrey, … Continue reading →<\/span><\/a><\/p>\n","protected":false},"author":2,"featured_media":0,"parent":318,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"sidebar-page.php","meta":{"footnotes":""},"class_list":["post-8525","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/mycor.iam.inrae.fr\/IAM\/index.php?rest_route=\/wp\/v2\/pages\/8525","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/mycor.iam.inrae.fr\/IAM\/index.php?rest_route=\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/mycor.iam.inrae.fr\/IAM\/index.php?rest_route=\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/mycor.iam.inrae.fr\/IAM\/index.php?rest_route=\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/mycor.iam.inrae.fr\/IAM\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=8525"}],"version-history":[{"count":0,"href":"https:\/\/mycor.iam.inrae.fr\/IAM\/index.php?rest_route=\/wp\/v2\/pages\/8525\/revisions"}],"up":[{"embeddable":true,"href":"https:\/\/mycor.iam.inrae.fr\/IAM\/index.php?rest_route=\/wp\/v2\/pages\/318"}],"wp:attachment":[{"href":"https:\/\/mycor.iam.inrae.fr\/IAM\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=8525"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}