Publications 2011

1. Amicucci, A., Balestrini, R., Kohler, A., Barbieri, E., Saltarelli, R., Faccio, A., Roberson, R.W., Bonfante, P., and Stocchi, V. (2011). Hyphal and cytoskeleton polarization in Tuber melanosporum: A genomic and cellular analysis. Fungal Genetics and Biology 48, 561–572.
2. Blaudez, D., and Chalot, M. (2011). Characterization of the ER-located zinc transporter ZnT1 and identification of a vesicular zinc storage compartment in Hebeloma cylindrosporum. Fungal Genetics and Biology 48, 496–503.
3. Bolchi, A., Ruotolo, R., Marchini, G., Vurro, E., di Toppi, L.S., Kohler, A., Tisserant, E., Martin, F., and Ottonello, S. (2011). Genome-wide inventory of metal homeostasis-related gene products including a functional phytochelatin synthase in the hypogeous mycorrhizal fungus Tuber melanosporum. Fungal Genetics and Biology 48, 573–584.
4. Buee, M., Maurice, J.-P., Zeller, B., Andrianarisoa, S., Ranger, J., Courtecuisse, R., Marcais, B., and Le Tacon, F. (2011). Influence of tree species on richness and diversity of epigeous fungal communities in a French temperate forest stand. Fungal Ecology 4, 22–31.
5. Bunet, R., Song, L., Mendes, M.V., Corre, C., Hotel, L., Rouhier, N., Framboisier, X., Leblond, P., Challis, G.L., and Aigle, B. (2011). Characterization and Manipulation of the Pathway-Specific Late Regulator AlpW Reveals Streptomyces ambofaciens as a New Producer of Kinamycins. Journal of Bacteriology 193, 1142–1153.
6. Calvaruso, C., Turpault, M.-P., Uroz, S., Leclerc, E., Kies, A., and Frey-Klett, P. (2011). Laccaria bicolor S238N improves Scots pine mineral nutrition by increasing root nutrient uptake from soil minerals but does not increase mineral weathering (vol 328, pg 145, 2010). Plant and Soil 346, 401–401.
7. Cardi, M., Chibani, K., Cafasso, D., Rouhier, N., Jacquot, J.-P., and Esposito, S. (2011). Abscisic acid effects on activity and expression of barley (Hordeum vulgare) plastidial glucose-6-phosphate dehydrogenase. Journal of Experimental Botany 62, 4013–4023.
8. Ceccaroli, P., Buffalini, M., Saltarelli, R., Barbieri, E., Polidori, E., Ottonello, S., Kohler, A., Tisserant, E., Martin, F., and Stocchi, V. (2011). Genomic profiling of carbohydrate metabolism in the ectomycorrhizal fungus Tuber melanosporum. New Phytologist 189, 751–764.
9. Chibani, K., Tarrago, L., Schuermann, P., Jacquot, J.-P., and Rouhier, N. (2011). Biochemical properties of poplar thioredoxin z. Febs Letters 585, 1077–1081.
10. Collignon, C., Uroz, S., Turpault, M.-P., and Frey-Klett, P. (2011). Seasons differently impact the structure of mineral weathering bacterial communities in beech and spruce stands. Soil Biology & Biochemistry 43, 2012–2022.
11. Courty, P.E., Labbe, J., Kohler, A., Marcais, B., Bastien, C., Churin, J.L., Garbaye, J., and Le Tacon, F. (2011). Effect of poplar genotypes on mycorrhizal infection and secreted enzyme activities in mycorrhizal and non-mycorrhizal roots. Journal of Experimental Botany 62, 249–260.
12. Couturier, J., Stroeher, E., Albetel, A.-N., Roret, T., Muthuramalingam, M., Tarrago, L., Seidel, T., Tsan, P., Jacquot, J.-P., Johnson, M.K., et al. (2011). Arabidopsis Chloroplastic Glutaredoxin C5 as a Model to Explore Molecular Determinants for Iron-Sulfur Cluster Binding into Glutaredoxins. Journal of Biological Chemistry 286, 27515–27527.
13. Cusano, A.M., Burlinson, P., Deveau, A., Vion, P., Uroz, S., Preston, G.M., and Frey-Klett, P. (2011). Pseudomonas fluorescens BBc6R8 type III secretion mutants no longer promote ectomycorrhizal symbiosis. Environmental Microbiology Reports 3, 203–210.
14. Defossez, E., Courbaud, B., Marcais, B., Thuiller, W., Granda, E., and Kunstler, G. (2011). Do interactions between plant and soil biota change with elevation? A study on Fagus sylvatica. Biology Letters 7, 699–701.
15. Diss, L., Blaudez, D., Gelhaye, E., and Chalot, M. (2011). Genome-wide analysis of fungal manganese transporters, with an emphasis on Phanerochaete chrysosporium. Environmental Microbiology Reports 3, 367–382.
16. Duplessis, S., Cuomo, C.A., Lin, Y.-C., Aerts, A., Tisserant, E., Veneault-Fourrey, C., Joly, D.L., Hacquard, S., Amselem, J., Cantarel, B.L., et al. (2011a). Obligate biotrophy features unraveled by the genomic analysis of rust fungi. Proceedings of the National Academy of Sciences of the United States of America 108, 9166–9171.
17. Duplessis, S., Hacquard, S., Delaruelle, C., Tisserant, E., Frey, P., Martin, F., and Kohler, A. (2011b). Melampsora larici-populina Transcript Profiling During Germination and Timecourse Infection of Poplar Leaves Reveals Dynamic Expression Patterns Associated with Virulence and Biotrophy. Molecular Plant-Microbe Interactions 24, 808–818.
18. Eastwood, D.C., Floudas, D., Binder, M., Majcherczyk, A., Schneider, P., Aerts, A., Asiegbu, F.O., Baker, S.E., Barry, K., Bendiksby, M., et al. (2011). The Plant Cell Wall-Decomposing Machinery Underlies the Functional Diversity of Forest Fungi. Science 333, 762–765.
19. Fabre, B., Piou, D., Desprez-Loustau, M.-L., and Marcais, B. (2011). Can the emergence of pine Diplodia shoot blight in France be explained by changes in pathogen pressure linked to climate change? Global Change Biology 17, 3218–3227.
20. Feau, N., Decourcelle, T., Husson, C., Desprez-Loustau, M.-L., and Dutech, C. (2011). Finding Single Copy Genes Out of Sequenced Genomes for Multilocus Phylogenetics in Non-Model Fungi. Plos One 6.
21. Frey-Klett, P., Burlinson, P., Deveau, A., Barret, M., Tarkka, M., and Sarniguet, A. (2011). Bacterial-Fungal Interactions: Hyphens between Agricultural, Clinical, Environmental, and Food Microbiologists. Microbiology and Molecular Biology Reviews 75, 583–+.
22. Garbaye, J. (2011). Exploratory workshop on diversity and function in ectomycorrhizal communities. Annals of Forest Science 68, 1–3.
23. Hacquard, S., Veneault-Fourrey, C., Delaruelle, C., Frey, P., Martin, F., and Duplessis, S. (2011). Validation of Melampsora larici-populina reference genes for in planta RT-quantitative PCR expression profiling during time-course infection of poplar leaves. Physiological and Molecular Plant Pathology 75, 106–112.
24. Husson, C., Scala, B., Cael, O., Frey, P., Feau, N., Ioos, R., and Marcais, B. (2011). Chalara fraxinea is an invasive pathogen in France. European Journal of Plant Pathology 130, 311–324.
25. Kaytoue, M., Duplessis, S., and Napoli, A. (2011a). Toward the Discovery of Itemsets with Significant Variations in Gene Expression Matrices. In Classification and Multivariate Analysis for Complex Data Structures, B. Fichet, D. Piccolo, R. Verde, and M. Vichi, eds. pp. 465–473.
26. Kaytoue, M., Kuznetsov, S.O., Napoli, A., and Duplessis, S. (2011b). Mining gene expression data with pattern structures in formal concept analysis. Information Sciences 181, 1989–2001.
27. Kuees, U., and Martin, F. (2011). On the road to understanding truffles in the underground. Fungal Genetics and Biology 48, 555–560.
28. L’Haridon, F., Aime, S., Duplessis, S., Alabouvette, C., Steinberg, C., and Olivain, C. (2011). Isolation of differentially expressed genes during interactions between tomato cells and a protective or a non-protective strain of Fusarium oxysporum. Physiological and Molecular Plant Pathology 76, 9–19.
29. Labbe, J., Jorge, V., Kohler, A., Vion, P., Marcais, B., Bastien, C., Tuskan, G.A., Martin, F., and Le Tacon, F. (2011a). Identification of quantitative trait loci affecting ectomycorrhizal symbiosis in an interspecific F-1 poplar cross and differential expression of genes in ectomycorrhizas of the two parents: Populus deltoides and Populus trichocarpa. Tree Genetics & Genomes 7, 617–627.
30. Labbe, J., Murat, C., Morin, E., Le Tacon, F., and Martin, F. (2011b). Survey and analysis of simple sequence repeats in the Laccaria bicolor genome, with development of microsatellite markers. Current Genetics 57, 75–88.
31. Loth-Pereda, V., Orsini, E., Courty, P.-E., Lota, F., Kohler, A., Diss, L., Blaudez, D., Chalot, M., Nehls, U., Bucher, M., et al. (2011). Structure and Expression Profile of the Phosphate Pht1 Transporter Gene Family in Mycorrhizal Populus trichocarpa. Plant Physiology 156, 2141–2154.
32. Malausa, T., Gilles, A., Meglecz, E., Blanquart, H., Duthoy, S., Costedoat, C., Dubut, V., Pech, N., Castagnone-Sereno, P., Delye, C., et al. (2011). High-throughput microsatellite isolation through 454 GS-FLX Titanium pyrosequencing of enriched DNA libraries. Molecular Ecology Resources 11, 638–644.
33. Marcais, B., Cael, O., and Delatour, C. (2011). Interaction between root rot basidiomycetes and Phytophthora species on pedunculate oak. Plant Pathology 60, 296–303.
34. Martin, F. (2011). A tsunami of data | Request PDF (researchgate.net). Biofutur 33–33.
35. Martin, F., Cullen, D., Hibbett, D., Pisabarro, A., Spatafora, J.W., Baker, S.E., and Grigoriev, I.V. (2011). Sequencing the fungal tree of life. New Phytologist 190, 818–821.
36. Mashkoor, A., and Jacquot, J.-P. (2011). Utilizing Event-B for domain engineering: a critical analysis. Requirements Engineering 16, 191–207.
37. Mello, A., Napoli, C., Murat, C., Morin, E., Marceddu, G., and Bonfante, P. (2011). ITS-1 versus ITS-2 pyrosequencing: a comparison of fungal populations in truffle grounds. Mycologia 103, 1184–1193.
38. Meux, E., Prosper, P., Ngadin, A., Didierjean, C., Morel, M., Dumarcay, S., Lamant, T., Jacquot, J.-P., Favier, F., and Gelhaye, E. (2011). Glutathione Transferases of Phanerochaete chrysosporium : S-glutathionyl-p-hydroquinone reductase belongs to a new structural class. Journal of Biological Chemistry 286, 9162–9173.
39. Montanini, B., Levati, E., Bolchi, A., Kohler, A., Morin, E., Tisserant, E., Martin, F., and Ottonello, S. (2011). Genome-wide search and functional identification of transcription factors in the mycorrhizal fungus Tuber melanosporum. New Phytologist 189, 736–750.
40. Murat, C., Riccioni, C., Belfiori, B., Cichocki, N., Labbe, J., Morin, E., Tisserant, E., Paolocci, F., Rubini, A., and Martin, F. (2011a). Distribution and localization of microsatellites in the Perigord black truffle genome and identification of new molecular markers. Fungal Genetics and Biology 48, 592–601.
41. Murat, C., Zampieri, E., Vallino, M., Daghino, S., Perotto, S., and Bonfante, P. (2011b). Genomic suppression subtractive hybridization as a tool to identify differences in mycorrhizal fungal genomes. Fems Microbiology Letters 318, 115–122.
42. Petre, B., Major, I., Rouhier, N., and Duplessis, S. (2011). Genome-wide analysis of eukaryote thaumatin-like proteins (TLPs) with an emphasis on poplar. Bmc Plant Biology 11.
43. Philibert, A., Desprez-Loustau, M.-L., Fabre, B., Frey, P., Halkett, F., Husson, C., Lung-Escarmant, B., Marcais, B., Robin, C., Vacher, C., et al. (2011). Predicting invasion success of forest pathogenic fungi from species traits. Journal of Applied Ecology 48, 1381–1390.
44. Plett, J.M., and Martin, F. (2011). Blurred boundaries: lifestyle lessons from ectomycorrhizal fungal genomes. Trends in Genetics 27, 14–22.
45. Plett, J.M., Kemppainen, M., Kale, S.D., Kohler, A., Legue, V., Brun, A., Tyler, B.M., Pardo, A.G., and Martin, F. (2011). A Secreted Effector Protein of Laccaria bicolor Is Required for Symbiosis Development. Current Biology 21, 1197–1203.
46. Pritsch, K., and Garbaye, J. (2011). Enzyme secretion by ECM fungi and exploitation of mineral nutrients from soil organic matter. Annals of Forest Science 68, 25–32.
47. Pritsch, K., Courty, P.E., Churin, J.-L., Cloutier-Hurteau, B., Ali, M.A., Damon, C., Duchemin, M., Egli, S., Ernst, J., Fraissinet-Tachet, L., et al. (2011). Optimized assay and storage conditions for enzyme activity profiling of ectomycorrhizae. Mycorrhiza 21, 589–600.
48. Redjala, T., Zelko, I., Sterckeman, T., Legue, V., and Lux, A. (2011). Relationship between root structure and root cadmium uptake in maize. Environmental and Experimental Botany 71, 241–248.
49. Rieux, A., Halkett, F., de Bellaire, L. de L., Zapater, M.-F., Rousset, F., Ravigne, V., and Carlier, J. (2011). Inferences on pathogenic fungus population structures from microsatellite data: new insights from spatial genetics approaches. Molecular Ecology 20, 1661–1674.
50. Roddaz, M., Said, A., Guillot, S., Antoine, P.-O., Montel, J.-M., Martin, F., and Darrozes, J. (2011). Provenance of Cenozoic sedimentary rocks from the Sulaiman fold and thrust belt, Pakistan: implications for the palaeogeography of the Indus drainage system. Journal of the Geological Society 168, 499–516.
51. Rouhier, N., Jacquot, J.-P., Miseviciene, L., Anusevicius, Z., Sarlauskas, J., and Cenas, N. (2011). Two-electron reduction of nitroaromatic compounds by Thermotoga maritima hybrid peroxiredoxin-nitroreductase enzyme. Chemija 22, 143–148.
52. Rubini, A., Belfiori, B., Riccioni, C., Arcioni, S., Martin, F., and Paolocci, F. (2011a). Tuber melanosporum: mating type distribution in a natural plantation and dynamics of strains of different mating types on the roots of nursery-inoculated host plants. New Phytologist 189, 723–735.
53. Rubini, A., Belfiori, B., Riccioni, C., Tisserant, E., Arcioni, S., Martin, F., and Paolocci, F. (2011b). Isolation and characterization of MAT genes in the symbiotic ascomycete Tuber melanosporum. New Phytologist 189, 710–722.
54. Selles, B., Jacquot, J.-P., and Rouhier, N. (2011). Comparative genomic study of protein disulfide isomerases from photosynthetic organisms. Genomics 97, 37–50.
55. Simonet, P., Plomion, C., and Martin, F. (2011). When genomics meets ecology. Biofutur 26–29.
56. Smiri, M., Chaoui, A., Rouhier, N., Gelhaye, E., Jacquot, J.-P., and El Ferjani, E. (2011). Cadmium Affects the Glutathione/Glutaredoxin System in Germinating Pea Seeds. Biological Trace Element Research 142, 93–105.
57. Tisserant, E., Da Silva, C., Kohler, A., Morin, E., Wincker, P., and Martin, F. (2011). Deep RNA sequencing improved the structural annotation of the Tuber melanosporum transcriptome. New Phytologist 189, 883–891.
58. Tovar-Mendez, A., Matamoros, M.A., Bustos-Sanmamed, P., Dietz, K.-J., Javier Cejudo, F., Rouhier, N., Sato, S., Tabata, S., and Becana, M. (2011). Peroxiredoxins and NADPH-Dependent Thioredoxin Systems in the Model Legume Lotus japonicus. Plant Physiology 156, 1535–1547.
59. Tyler, B.M., Kale, S.D., Antignani, V., Vega-Arreguin, J., Anderson, R., Gu, B., Capelluto, D.G., Dou, D., Feldman, E., Rumore, A., et al. (2011). How PI-3-P mediates entry of oomycete, fungal and insect effectors into host cells. Phytopathology 101, S230–S230.
60. Uroz, S., and Frey-Klett, P. (2011). Linking diversity to function: highlight on the mineral weathering bacteria. Central European Journal of Biology 6, 817–820.
61. Uroz, S., Turpault, M.-P., Van Scholl, L., Palin, B., and Frey-Klett, P. (2011a). Long term impact of mineral amendment on the distribution of the mineral weathering associated bacterial communities from the beech Scleroderma citrinum ectomycorrhizosphere. Soil Biology & Biochemistry 43, 2275–2282.
62. Uroz, S., Marmeisse, R., Buee, M., Dessaux, Y., Faure, D., and Geremia, R. (2011b). Diversity to the function of low soil anthropised. Biofutur 39–43.
63. Uroz, S., Oger, P., Lepleux, C., Collignon, C., Frey-Klett, P., and Turpault, M.-P. (2011c). Bacterial weathering and its contribution to nutrient cycling in temperate forest ecosystems. Research in Microbiology 162, 820–831.
64. Vallino, M., Zampieri, E., Murat, C., Girlanda, M., Picarella, S., Pitet, M., Portis, E., Martino, E., and Perotto, S. (2011). Specific regions in the Sod1 locus of the ericoid mycorrhizal fungus Oidiodendron maius from metal-enriched soils show a different sequence polymorphism. Fems Microbiology Ecology 75, 321–331.
65. Veneault-Fourrey, C., and Martin, F. (2011). Mutualistic interactions on a knife-edge between saprotrophy and pathogenesis. Current Opinion in Plant Biology 14, 444–450.
66. Vialle, A., Frey, P., Hambleton, S., Bernier, L., and Hamelin, R.C. (2011). Poplar rust systematics and refinement of Melampsora species delineation. Fungal Diversity 50, 227–248.
67. Vieira, A., Talhinhas, P., Loureiro, A., Duplessis, S., Fernandez, D., Silva, M. do C., Paulo, O.S., and Azinheira, H.G. (2011). Validation of RT-qPCR reference genes for in planta expression studies in Hemileia vastatrix, the causal agent of coffee leaf rust. Fungal Biology 115, 891–901.
68. Wang, L., Ren, X., Li, Y., Rouhier, N., Jacquot, J.-P., Jin, C., and Xia, B. (2011). H-1, C-13, and N-15 resonance assignments of reduced GrxS14 from Populus tremula x tremuloides. Biomolecular Nmr Assignments 5, 121–124.
69. Xhaard, C., Fabre, B., Andrieux, A., Gladieux, P., Barres, B., Frey, P., and Halkett, F. (2011). The genetic structure of the plant pathogenic fungus Melampsora larici-populina on its wild host is extensively impacted by host domestication. Molecular Ecology 20, 2739–2755.
70. Zampieri, E., Balestrini, R., Kohler, A., Abba, S., Martin, F., and Bonfante, P. (2011). The Perigord black truffle responds to cold temperature with an extensive reprogramming of its transcriptional activity. Fungal Genetics and Biology 48, 585–591.
71. Zuccaro, A., Lahrmann, U., Gueldener, U., Langen, G., Pfiffi, S., Biedenkopf, D., Wong, P., Samans, B., Grimm, C., Basiewicz, M., et al. (2011). Endophytic Life Strategies Decoded by Genome and Transcriptome Analyses of the Mutualistic Root Symbiont Piriformospora indica. Plos Pathogens 7.