Publications 2023

1. Nicolas Rouhier. Ferredoxins at the crossroads. Nature Chemical Biology, 2023, 19 (2), pp.129-130. ⟨10.1038/s41589-022-01176-3⟩. ⟨hal-04059912⟩

2. Yuhua Gong, Annie Lebreton, Feng Zhang, Francis Martin. Role of carbohydrate-active enzymes in mycorrhizal symbioses. Essays in Biochemistry, 2023, 67 (3), pp.471-478. ⟨10.1042/EBC20220127⟩. ⟨hal-04305717⟩

3. Annie Lebreton, John Ramana, Changfeng Zhang, Yiming Meng. Multiple facets of cutting‐edge mycorrhizal research. New Phytologist, 2023, 238 (5), pp.1771-1774. ⟨10.1111/nph.18825⟩. ⟨hal-04412295⟩

4. Jianbo Xie, Yuchao Ma, Xian Li, Jiadong Wu, Francis Martin, Deqiang Zhang. Multifeature analysis of age‐related microbiome structures reveals defense mechanisms of Populus tomentosa trees. New Phytologist, 2023, 238 (4), pp.1636-1650. ⟨10.1111/nph.18847⟩. ⟨hal-04305721⟩

5. Qi Zhao, Stéphane Uroz, Tianpeng Gao, Jing Li, Fengqin He, Rusly Rosazlina, Francis Martin, Lingling Xu. The cultivation regimes of Morchella sextelata trigger shifts in the community assemblage and ecological traits of soil bacteria. Frontiers in Microbiology, 2023, 14 (5), pp.1257905. ⟨10.3389/fmicb.2023.1257905⟩. ⟨hal-04216180⟩

6. Anne Sophie Brinquin, Christophe Bailly, Florent Barbier, Céline Barthet, Sébastien Biga. Processionnaire du chêne : vers un nouveau moyen de lutte ?. Phytoma la Défense des Végétaux, 2023, 762, pp.9-12. ⟨10.17180/s5j2-h920⟩. ⟨hal-04547719⟩

7. Loïck Christ, Jérémy Couturier, Nicolas Rouhier. Relationships between the Reversible Oxidation of the Single Cysteine Residue and the Physiological Function of the Mitochondrial Glutaredoxin S15 from Arabidopsis thaliana. Antioxidants , 2023, 12 (1), pp.102. ⟨10.3390/antiox12010102⟩. ⟨hal-04059914⟩

8. Maria Jesus Sutta Martiarena, Aurélie Deveau, Quimi Vidaurre Montoya, Laura V Flórez, Andre Rodrigues. The Hyphosphere of Leaf-Cutting Ant Cultivars Is Enriched with Helper Bacteria. Microbial ecology, In press, ⟨10.1007/s00248-023-02187-w⟩. ⟨hal-03980149⟩

9. Flavien Zannini, Johannes M Herrmann, Jérémy Couturier, Nicolas Rouhier. Oxidation of Arabidopsis thaliana COX19 Using the Combined Action of ERV1 and Glutathione. Antioxidants , 2023, 12 (11), pp.1949. ⟨10.3390/antiox12111949⟩. ⟨hal-04592940⟩

10. Tiffani Pozzi, Bénédicte Fabre, Vincent Bourlon, Alain Berthelot, Aurore Desgroux. Comportement en France de trois peupliers euraméricains : Muur, Vesten et Oudenberg. Forêt et Innovation, 2023, 4, p. 44-48. ⟨hal-04347503⟩

11. Benoit Marçais, Arnaud Giraudel, Claude Husson. Ability of the ash dieback pathogen to reproduce and to induce damage on its host are controlled by different environmental parameters. PLoS Pathogens, 2023, 19 (4), pp.e1010558. ⟨10.1371/journal.ppat.1010558⟩. ⟨hal-04231234⟩

12. Stéphane Uroz, Phil M. Oger. High-Throughput Screening of Fosmid Libraries for Increased Identification of Novel N-Acyl Homoserine Lactone Degrading Enzymes. Microbial Environmental Genomics (MEG), 2605, Springer US, pp.227-240, 2023, Methods in Molecular Biology, ⟨10.1007/978-1-0716-2871-3_12⟩. ⟨hal-04683698⟩

13. Chunye Mou, Yuhua Gong, Lianfu Chen, Francis Martin, Heng Kang, Yinbing Bian. Comparative analysis of simulated in-situ colonization and degradation by Lentinula edodes on oak wafer and corn stalk. Frontiers in Microbiology, 2023, 14, pp.1286064. ⟨10.3389/fmicb.2023.1286064⟩. ⟨hal-04592989⟩

14. Yang Li, Yong-Mei Xing, Claude Murat, Annegret Kohler, Dong-Yu Zhou, Fu-Qiang Yu, Juan Chen. Transcriptome and metabolome analysis reveals stage-specific metabolite accumulation during maturity of Chinese black truffle Tuber indicum. Plant Physiology and Biochemistry, 2023, 205, pp.108158. ⟨10.1016/j.plaphy.2023.108158⟩. ⟨hal-04593088⟩

15. Simon Laubray, Marc Buée, Benoit Marçais. Evidence of a component Allee effect for an invasive pathogen: Hymenoscyphus fraxineus, the ash dieback agent. Biological Invasions, 2023, 25 (8), pp.2567-2582. ⟨10.1007/s10530-023-03057-9⟩. ⟨hal-04219986⟩

16. Laura Picard, Cintia Blanco Nouche, Carine Cochet, Marie-Pierre Turpault, Stéphane Uroz. Mineral weathering by Collimonas pratensis PMB3(1) as a function of mineral properties, solution chemistry and carbon substrate. npj Materials Degradation, 2023, 7 (1), pp 76. ⟨10.1038/s41529-023-00396-9⟩. ⟨hal-04216176⟩

17. Ariska van der Nest, Michael J Wingfield, Dušan Sadiković, Martin S Mullett, Benoit Marçais, Valentin Queloz, Katarina Adamčíková, Kateryna Davydenko, Irene Barnes. Population structure and diversity of the needle pathogen Dothistroma pini suggests human-mediated movement in Europe. Frontiers in Genetics, 2023, 14 (8), pp.2567-2582. ⟨10.3389/fgene.2023.1103331⟩. ⟨hal-04231281⟩

18. Emiko K Stuart, Vasanth Singan, Mojgan Amirebrahimi, Hyunsoo Na, Vivian Ng, Igor V Grigoriev, Francis Martin, Ian C Anderson, Jonathan M Plett, Krista L Plett. Acquisition of host-derived carbon in biomass of the ectomycorrhizal fungus Pisolithus microcarpus is correlated to fungal carbon demand and plant defences. FEMS Microbiology Ecology, 2023, 99 (5), pp.fiad037. ⟨10.1093/femsec/fiad037⟩. ⟨hal-04174947⟩

19. Damien Caubrière, Anna Moseler, Nicolas Rouhier, Jérémy Couturier. Diversity and roles of cysteine desulfurases in photosynthetic organisms. Journal of Experimental Botany, 2023, 74 (11), pp.3345-3360. ⟨10.1093/jxb/erad065⟩. ⟨hal-04593074⟩

20. Valentin Queloz, Hervé Jactel, Benoit Marçais, Eckehard G. Brockerhoff, Marco Pautasso. Rôle des agents biotiques dans les crises sanitaires forestières. Revue forestière française, 2023, 74 (2), pp.133-143. ⟨10.20870/revforfr.2023.7587⟩. ⟨hal-04233852⟩

21. Bénédicte Fabre, Pierre Santerre Filleux D’arrentières, Christophe Bailly, Jérôme Demaison, Jérémy Pétrowski, Fabien Halkett. Mise au point d’un automate et d’une méthode d’analyse d’images pour le suivi de cinétiques d’infection par un champignon pathogène foliaire. NOV’AE, 2023, 15, pp.1-9. ⟨10.17180/novae-2023-NO-art15⟩. ⟨hal-04620316⟩

22. Yan Zhang, Sifan Sun, Didi Luo, Ping Mao, Rusly Rosazlina, Francis Martin, Lingling Xu. Decline in Morel Production upon Continuous Cropping Is Related to Changes in Soil Mycobiome. Journal of Fungi, 2023, 9 (4), pp.492. ⟨10.3390/jof9040492⟩. ⟨hal-04149338⟩

23. Nicolas Valette, Arnaud Legout, Barry Goodell, Gry Alfredsen, Lucas Auer, Eric Gelhaye, Delphine Derrien. Impact of Norway spruce pre-degradation stages induced by Gloeophyllum trabeum on fungal and bacterial communities. Fungal Ecology, 2023, 61, pp.101188. ⟨10.1016/j.funeco.2022.101188⟩. ⟨hal-04106625⟩

24. François Maillard, Valentin Leduc, Chloé Viotti, Allison Gill, Emmanuelle Morin, Arnaud Reichard, Isabelle Ziegler-Devin, Bernhard Zeller, Marc Buée. Fungal communities mediate but do not control leaf litter chemical transformation in a temperate oak forest. Plant and Soil, 2023, 489 (1-2), pp. 573-591. ⟨10.1007/s11104-023-06040-4⟩. ⟨hal-04219992⟩

25. Helene Röhricht, Jonathan Przybyla-Toscano, Joachim Forner, Clément Boussardon, Olivier Keech, Nicolas Rouhier, Etienne Meyer. Mitochondrial ferredoxin-like is essential for forming complex I-containing supercomplexes in Arabidopsis. Plant Physiology, 2023, 191 (4), pp.2170-2184. ⟨10.1093/plphys/kiad040⟩. ⟨hal-04059909⟩

26. François Maillard, Annegret Kohler, Emmanuelle Morin, Christian Hossann, Shingo Miyauchi, Isabelle Ziegler-Devin, Dominique Gérant, Nicolas Angeli, Anna Lipzen, Keykhosrow Keymanesh, Jenifer Johnson, Kerrie Barry, Igor Grigoriev, Francis Martin, Marc Buée. Functional genomics gives new insights into the ectomycorrhizal degradation of chitin. New Phytologist, 2023, 238 (2), pp.845-858. ⟨10.1111/nph.18773⟩. ⟨hal-04219917⟩

27. E N Dort, E. Layne, N. Feau, A. Butyaev, B. Henrissat, F M Martin, S. Haridas, A. Salamov, I V Grigoriev, M. Blanchette, R C Hamelin. Large-scale genomic analyses with machine learning uncover predictive patterns associated with fungal phytopathogenic lifestyles and traits. Scientific Reports, 2023, 13 (1), pp.17203. ⟨10.1038/s41598-023-44005-w⟩. ⟨hal-04537268⟩

28. Claire Benezech, Elsa Ballini, Benjamin Petre. Enjeux liés à l’enseignement supérieur en pathologie végétale. Phytoma , 2023, 769-770. ⟨hal-04564584⟩

29. Arnaud Besserer, Christophe Rose, Aurélie Deveau. Visualization of Fungi During Wood Colonization and Decomposition by Microscopy: From Light to Electron Microscopy. Microbial Environmental Genomics (MEG), 2605, Springer US, pp.337-361, 2023, Methods in Molecular Biology, ⟨10.1007/978-1-0716-2871-3_17⟩. ⟨hal-03980172⟩

30. Christel Leyronas, Fabien Halkett, Vincent Faloya. Airborne versus soilborne inoculum: White mould, where do you come from?. Plant Pathology, 2023, 72 (4), pp.651-839. ⟨10.1111/ppa.13699⟩. ⟨hal-03951281⟩

31. Sophie Mieszkin, Blandine Trouche, Julien Ancousture, Youssef Raouf, Stéphane Uroz, Karine Alain. Scleromatobacter humisilvae gen. nov., sp. nov., a novel bacterium isolated from oak forest soil. International Journal of Systematic and Evolutionary Microbiology, 2023, 73 (3), pp.005793. ⟨10.1099/ijsem.0.005793⟩. ⟨hal-04236566⟩

32. Pamela Guerillot, Asaf Salamov, Clémentine Louet, Emmanuelle Morin, Pascal Frey, Igor V. Grigoriev, Sébastien Duplessis. A remarkable expansion of oligopeptide transporter genes in rust fungi (Pucciniales) suggests a specialization in nutrients acquisition for obligate biotrophy. Phytopathology, 2023, 113 (2), pp.252-264. ⟨10.1094/PHYTO-04-22-0128-R⟩. ⟨hal-03847696⟩

33. Jean-Francois Guegan, Benoît de Thoisy, Mireia Gómez-Gallego, Hervé Jactel. World forests, global change, and emerging pests and pathogens. Current Opinion in Environmental Sustainability, 2023, 61, pp.101266. ⟨10.1016/j.cosust.2023.101266⟩. ⟨hal-04099860⟩

34. François Maillard, Valentin Leduc, Cyrille Bach, Elisa Thébault, Arnaud Reichard, Emmanuelle Morin, Laurent Saint-André, Bernhard Zeller, Marc Buée. Aboveground organic matter removal reshapes soil microbial functional group balance in temperate forests. Applied Soil Ecology, 2023, 184, pp.104776. ⟨10.1016/j.apsoil.2022.104776⟩. ⟨hal-04219911⟩

35. Maíra de Freitas Pereira, David Cohen, Lucas Auer, Nathalie Aubry, Marie-Béatrice Bogeat-Triboulot, Cyril Buré, Nancy Engle, Yves Jolivet, Annegret Kohler, Ondřej Novák, Iva Pavlović, Pierrick Priault, Timothy Tschaplinski, Irène Hummel, Marie-Noëlle Vaultier, Claire Veneault-Fourrey. Ectomycorrhizal symbiosis prepares its host locally and systemically for abiotic cue signaling. The Plant Journal, In press, 116 (6), pp.1784-1803. ⟨10.1111/tpj.16465⟩. ⟨hal-04210267⟩

36. Jonathan M Plett, Shingo Miyauchi, Emmanuelle Morin, Krista Plett, Johanna Wong-Bajracharya, Maira de Freitas Pereira, Alan Kuo, Bernard Henrissat, Elodie Drula, Dominika Wojtalewicz, Robert Riley, Jasmyn Pangilinan, William Andreopoulos, Kurt Labutti, Chris Daum, Yuko Yoshinaga, Laure Fauchery, Vivian Ng, Anna Lipzen, Kerrie Barry, Vasanth Singan, Jie Guo, Teresa Lebel, Mauricio Dutra Costa, Igor V Grigoriev, Francis Martin, Ian C Anderson, Annegret Kohler . Speciation underpinned by unexpected molecular diversity in the mycorrhizal fungal genus Pisolithus. Molecular Biology and Evolution, 2023, 40 (3), pp.msad045. ⟨10.1093/molbev/msad045⟩. ⟨hal-04143140⟩

37. Neha Sahu, Boris Indic, Johanna Wong-Bajracharya, Zsolt Merényi, Huei-Mien Ke, Steven Ahrendt, Tori-Lee Monk, Sándor Kocsubé, Elodie Drula, Anna Lipzen, Balázs Bálint, Bernard Henrissat, Bill Andreopoulos, Francis Martin, Christoffer Bugge Harder, Daniel Rigling, Kathryn Ford, Gary Foster, Jasmyn Pangilinan, Alexie Papanicolaou, Kerrie Barry, Kurt Labutti, Máté Virágh, Maxim Koriabine, Mi Yan, Robert Riley, Simang Champramary, Krista Plett, Igor Grigoriev, Isheng Jason Tsai, Jason Slot, György Sipos, Jonathan Plett, László Nagy. Vertical and horizontal gene transfer shaped plant colonization and biomass degradation in the fungal genus Armillaria. Nature Microbiology, 2023, 8 (9), pp.1668-1681. ⟨10.1038/s41564-023-01448-1⟩. ⟨hal-04382375⟩

38. Sofia Branco, Jacob C Douma, Eckehard G Brockerhoff, Mireia Gomez-Gallego, Benoit Marçais, Simone Prospero, José Carlos Franco, Hervé Jactel, Manuela Branco. Eradication programs against non-native pests and pathogens of woody plants in Europe: which factors influence their success or failure?. NeoBiota, 2023, 84, pp.281-317. ⟨10.3897/neobiota.84.95687⟩. ⟨hal-04231312⟩

39. Wen Fu, Camille Bonnet, Alexandra Septfons, Julie Figoni, Jonas Durand, Pascale Frey-Klett, Denis Rustand, Benoît Jaulhac, Raphaëlle Métras. Spatial and seasonal determinants of Lyme borreliosis incidence in France, 2016 to 2021. Eurosurveillance, 2023, 28 (14), pp.2200581. ⟨10.2807/1560-7917.ES.2023.28.14.2200581⟩. ⟨hal-04074262⟩

40. Delphine Noel, John E Hallsworth, Eric Gelhaye, Sylvain Darnet, Rodnay Sormani, Mélanie Morel‐Rouhier. Modes‐of‐action of antifungal compounds: Stressors and (target‐site‐specific) toxins, toxicants, or toxin-stressors. Microbial Biotechnology, 2023, 16 (7), pp.1438-1455. ⟨10.1111/1751-7915.14242⟩. ⟨hal-04147138⟩

41. Qingchao Zeng, Annie Lebreton, Lucas Auer, Xiaowu Man, Liukun Jia, Gengshen Wang, Sai Gong, Vincent Lombard, Marc Buée, Gang Wu, Yucheng Dai, Zhuliang Yang, Francis M Martin. Stable functional structure despite high taxonomic variability across fungal communities in soils of old-growth montane forests. Microbiome, 2023, 11 (1), pp.217. ⟨10.1186/s40168-023-01650-7⟩. ⟨hal-04225226⟩

42. Anna Caccamo, Félix Vega de Luna, Khadija Wahni, Alexander N Volkov, Jonathan Przybyla-Toscano, et al.. Ascorbate Peroxidase 2 (APX2) of Chlamydomonas Binds Copper and Modulates the Copper Insertion into Plastocyanin. Antioxidants , 2023, 12 (11), pp.1946. ⟨10.3390/antiox12111946⟩. ⟨hal-04389949⟩

43. Julien Vigneaud, Annegret Kohler, Mamadou Dia Sow, Alain Delaunay, Laure Fauchery, et al.. DNA hypomethylation of the host tree impairs interaction with mutualistic ectomycorrhizal fungus. New Phytologist, 2023, 238 (6), pp.2561-2577. ⟨10.1111/nph.18734⟩. ⟨hal-04050258⟩

44. Mathieu Schwartz, Thomas Perrot, Jordan Beurton, Flavien Zannini, Mélanie Morel-Rouhier, et al.. Structural insights into the interactions of glutathione transferases with a nitric oxide carrier and sodium nitroprusside. Biochemical and Biophysical Research Communications, 2023, 649, pp.79-86. ⟨10.1016/j.bbrc.2023.01.099⟩. ⟨hal-03985658⟩

45. Cintia Blanco Nouche, Cédric Paris, Tiphaine Dhalleine, Phil M. Oger, Marie-Pierre Turpault, et al.. The non-ribosomal peptide synthetase-independent siderophore (NIS) rhizobactin produced by Caballeronia mineralivorans PML1(12) confers the ability to weather minerals. Applied and Environmental Microbiology, 2023, 89 (10), pp.0045323. ⟨10.1128/aem.00453-23⟩. ⟨hal-04297012⟩

46. Clémentine Louet, Méline Saubin, Axelle Andrieux, Antoine Persoons, Mathilde Gorse, Jérémy Pétrowski, Bénédicte Fabre, Stéphane De Mita, Sébastien Duplessis, Pascal Frey, Fabien Halkett. A point mutation and large deletion at the candidate avirulence locus AvrMlp7 in the poplar rust fungus correlate with poplar RMlp7 resistance breakdown. Molecular Ecology, 2023, 32 (10), pp.2472-2483. ⟨10.1111/mec.16294⟩. ⟨hal-03510966⟩

47. Elodie Muller, Miloň Dvořák, Benoit Marçais, Elsa Caeiro, Bernard Clot, Marie-Laure Desprez-Loustau, Björn Gedda, Karl Lundén, Duccio Migliorini, Gilles Oliver, Ana Paula Ramos, Daniel Rigling, Ondřej Rybníček, Alberto Santini, Salome Schneider, Jan Stenlid, Emma Tedeschini, Jaime Aguayo, Mireia Gomez-Gallego. Conditions of emergence of the Sooty Bark Disease and aerobiology of Cryptostroma corticale in Europe. NeoBiota, 2023, 84, pp.319 – 347. ⟨10.3897/neobiota.84.90549⟩. ⟨hal-04231296⟩

48. Marion Schilling, Marceau Levasseur, Muriel Barbier, Lydie Oliveira-Correia, Céline Henry, et al.. Wood Degradation by Fomitiporia mediterranea M. Fischer: Exploring Fungal Adaptation Using Metabolomic Networking. Journal of Fungi, 2023, 9 (5), pp.536. ⟨10.3390/jof9050536⟩. ⟨hal-04176026⟩

49. Noah Hensen, Lucas Bonometti, Ivar Westerberg, Ioana Onut Brännström, Sonia Guillou, et al.. Genome-scale phylogeny and comparative genomics of the fungal order Sordariales. Molecular Phylogenetics and Evolution, 2023, 189, pp.107938. ⟨10.1016/j.ympev.2023.107938⟩. ⟨hal-04709225⟩

50. Marine Cambon, Dinïa Cartry, Emilie Chancerel, Camille Ziegler, Sebastien Levionnois, et al.. Drought tolerance traits in Neotropical trees correlate with the composition of phyllosphere fungal communities. Phytobiomes Journal, 2023, 7 (2), pp.244-253. ⟨10.1094/PBIOMES-04-22-0023-R⟩. ⟨hal-03689880⟩

51. Samuele Moretti, Mary-Lorène Goddard, Alessandro Puca, Jacques Lalevée, Stefano Di Marco, et al.. First Description of Non-Enzymatic Radical-Generating Mechanisms Adopted by Fomitiporia mediterranea: An Unexplored Pathway of the White Rot Agent of the Esca Complex of Diseases. Journal of Fungi, 2023, 9 (4), pp.498. ⟨10.3390/jof9040498⟩. ⟨hal-04174966⟩

52. Ivette Acuña, Jorge Andrade-Piedra, Didier Andrivon, Josep Armengol, A. Elizabeth Arnold, et al.. A Global Assessment of the State of Plant Health. Plant Disease, 2023, 107 (12), pp.3649-3665. ⟨10.1094/PDIS-01-23-0166-FE⟩. ⟨hal-04677391⟩

53. Méline Saubin, Clémentine Louet, Lydia Bousset, Frédéric Fabre, Pascal Frey, Isabelle Fudal, Frédéric Grognard, Frédéric M. Hamelin, Ludovic Mailleret, Solenn Stoeckel, Suzanne Touzeau, Benjamin Petre, Fabien Halkett. Improving sustainable crop protection using population genetics concepts. Molecular Ecology, 2023, 32 (10), pp.2461-2471. ⟨10.1111/mec.16634⟩. ⟨hal-03394837v2⟩

54. Josip Safran, Wafae Tabi, Vanessa Ung, Adrien Lemaire, Olivier Habrylo, et al.. Plant polygalacturonase structures specify enzyme dynamics and processivities to fine-tune cell wall pectins. The Plant cell, 2023, pp.1-19. ⟨10.1093/plcell/koad134⟩. ⟨hal-04106623⟩

55. Zhao H, Dai yc, Wu F, Liu XY, Maurice S, Krutovsky KV, Pavlov IN, Lindner DL, Martin FM, Yuan Y. (2023) Insights into the ecological diversification of the Hymenochaetales based on comparative genomics and phylogenomics with an emphasis on Coltricia. Genome Biology and Evolution 15: evad136.

56. Hensen N, Bonometti L, Westerberg I, Brännström IO, Guillou S, Cros-Aarteil S, ….Martin, F……et al. (2023) Genome-scale phylogeny and comparative genomics of the fungal order Sordariales. Molecular Phylogenetics and Evolution 189: 107938.