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1. Liang Shi, Zi Wang, Ju Hong Chen, Hao Qiu, Wei Dong Liu, et al.. LbSakA ‐mediated phosphorylation of the scaffolding protein LbNoxR in the ectomycorrhizal basidiomycete Laccaria bicolor regulates NADPH oxidase activity, ROS accumulation and symbiosis development. New Phytologist, 2024, 243 (1), pp.381-397. ⟨10.1111/nph.19813⟩. ⟨hal-04693895⟩

2. Christoffer Bugge Harder, Shingo Miyauchi, Máté Virágh, Alan Kuo, Ella Thoen, et al.. Extreme overall mushroom genome expansion in Mycena s.s. irrespective of plant hosts or substrate specializations. Cell Genomics, 2024, 4 (7), pp.100586. ⟨10.1016/j.xgen.2024.100586⟩. ⟨hal-04795684⟩

3. Morin E., Stéphane Uroz, Kumar R., Rey M.W., Pham J., et al.. Draft genome sequence of Collimonas sp. strain H4R21, an effective mineral-weathering bacterial strain isolated from the beech rhizosphere. Microbiology Resource Announcements, 2024, 13 (8), ⟨10.1128/mra.00308-24⟩. ⟨hal-04672477⟩

4. Yuwei Zhang, Huan Feng, Irina Druzhinina, Xianan Xie, Ertao Wang, et al.. Phosphorus/nitrogen sensing and signaling in diverse root-fungus symbioses. Trends in Microbiology, 2024, 32 (2), pp.200-215. ⟨10.1016/j.tim.2023.08.005⟩. ⟨hal-04615609⟩

5. Nicolas Rouhier, Claude Didierjean. Structural Diversity and Specificities within the Ferredoxin-Disulfide/Thioredoxin Reductase Family. Encyclopedia of Inorganic and Bioinorganic Chemistry, 2024, pp.1-10. ⟨10.1002/9781119951438.eibc2868⟩. ⟨hal-04829025⟩

6. Francis Martin, Marcel van der Heijden. The mycorrhizal symbiosis: research frontiers in genomics, ecology, and agricultural application. New Phytologist, 2024, 242 (4), pp.1486-1506. ⟨10.1111/nph.19541⟩. ⟨hal-04593098⟩

7. Yang Yu, Tianhai Liu, Yong Wang, Lixu Liu, Xiaolan He, et al.. Comparative analyses of Pleurotus pulmonarius mitochondrial genomes reveal two major lineages of mini oyster mushroom cultivars. Computational and Structural Biotechnology Journal, 2024, 23, pp.905-917. ⟨10.1016/j.csbj.2024.01.021⟩. ⟨hal-04693881⟩

8. Nicolas Rouhier, Claude Didierjean. Structural diversity and specificities within the ferredoxin disulfide/thioredoxin reductase family. Wiley online library. Encyclopedia of Inorganic and bioinorganic chemistry, 2024, 9781119951438. ⟨10.1002/9781119951438⟩. ⟨hal-04628824⟩

9. Morgane Duret, Adrian Wallner, Marc Buée, Aziz Aziz. Rhizosphere microbiome assembly, drivers and functions in perennial ligneous plant health. Microbiological Research, 2024, 287, pp.127860. ⟨10.1016/j.micres.2024.127860⟩. ⟨hal-04795658⟩

10. Jérôme Salse, Romain Barnard, Claire Veneault-Fourrey, Hatem Rouached. Strategies for breeding crops for future environments. Trends in Plant Science, 2024, 29 (3), pp.303-318. ⟨10.1016/j.tplants.2023.08.007⟩. ⟨hal-04590036⟩

11. Stéphane Uroz, Ségolène Bouche, Emmanuelle Morin, Mathilde Bocquart, Ravi Kumar, et al.. Collimonas rhizosphaerae sp. nov., a novel species isolated from the beech rhizosphere. International Journal of Systematic and Evolutionary Microbiology, 2024, 74 (7), pp.006481. ⟨10.1099/ijsem.0.006481⟩. ⟨hal-04672474⟩

12. Simon Laubray, Marc Buée, Benoit Marçais. Hymenoscyphus fraxineus persistence in the ash litter. Plant Pathology, In press, 73 (7), pp.1937-1946. ⟨10.1111/ppa.13948⟩. ⟨hal-04581858⟩

13. Antoine Kairis, Benjamin Das Neves, Jérémy Couturier, Claire Remacle, Nicolas Rouhier. Iron‑sulfur cluster synthesis in plastids by the SUF system: A mechanistic and structural perspective. Biochimica et Biophysica Acta – Molecular Cell Research, 2024, 1871 (7), pp.119797. ⟨10.1016/j.bbamcr.2024.119797⟩. ⟨hal-04795850⟩

14. Claire Letanneur, Alexandre Brisson, Mathias Bisaillon, Théo Devèze, Mélodie B Plourde, et al.. Host-Specific and Homologous Pairs of Melampsora larici-populina Effectors Unveil Novel Nicotiana benthamiana Stromule Induction Factors. Molecular Plant-Microbe Interactions, 2024, 37 (3), pp.277-289. ⟨10.1094/MPMI-09-23-0148-FI⟩. ⟨hal-04693397⟩

15. Nathan Fornes, Catherine Bastien, Bénédicte Fabre, Vincent Bourlon, Patrick Baldet, et al.. Conseils d’utilisation des matériels forestiers de reproduction : Peupliers cultivés (Populus spp.) (8ème édition). 2024. ⟨hal-04811634⟩

16. F Fracchia, F Guinet, N L Engle, T J Tschaplinski, C Veneault-Fourrey, et al.. Microbial colonisation rewires the composition and content of poplar root exudates, root and shoot metabolomes. Microbiome, 2024, 12 (173), pp.21. ⟨10.1186/s40168-024-01888-9⟩. ⟨hal-04703366⟩

17. Julie Lintz, Yukihisa Goto, Kyle Bender, Raphaël Bchini, Guillaume Dubrulle, et al.. Genetically clustered antifungal phytocytokines and receptor protein family members cooperate to trigger
plant immune signaling. Journal of Experimental Botany, 2024, ⟨10.1093/jxb/erae297⟩. ⟨hal-04807116⟩

18. Maria Caballol, Miguel Ángel Redondo, Núria Catalán, Tamara Corcobado, Thomas Jung, et al.. Climate acts as an environmental filter to plant pathogens. The International Society of Microbiologial Ecology Journal, 2024, 18 (1), pp.wrae010. ⟨10.1093/ismejo/wrae010⟩. ⟨hal-04581877⟩

19. Joao Oliveira, Jean-Michel Reynes, Hervé Morel, Pascal Frey, Olivier Perrotin, et al.. Test Methodology for Short-Circuit Assessment and Safe Operation Identification for Power SiC MOSFETs. Energies, 2024, 17, pp.5476. ⟨10.3390/en17215476⟩. ⟨hal-04843993⟩

20. Mads Bjørlie, Rachel Irankunda, Betül Yesiltas, Ann‐dorit Moltke Sørensen, Jean‐michel Girardet, et al.. Metal‐chelating antioxidant peptides: Biosensor screening methods as alternatives to the ferrozine assay. Journal of the American Oil Chemists’ Society, 2024, 101 (9), pp.827-837. ⟨10.1002/aocs.12834⟩. ⟨hal-04700891⟩

21. Jonathan Plett, Dominika Wojtalewicz, Krista Plett, Sabrina Collin, Annegret Kohler, et al.. Sesquiterpenes of the ectomycorrhizal fungus Pisolithus microcarpus alter root growth and promote host colonization. Mycorrhiza, 2024, 34 (1-2), pp.69-84. ⟨10.1007/s00572-024-01137-9⟩. ⟨hal-04644888⟩

22. Farès Slimani, Laurence Hotel, Aurélie Deveau, Bertrand Aigle, Patrick Chaimbault, et al.. Membrane-based preparation for mass spectrometry imaging of cultures of bacteria. Analytical and Bioanalytical Chemistry, 2024, 416 (29), pp.7161 – 7172. ⟨10.1007/s00216-024-05622-0⟩. ⟨hal-04781473⟩

23. Arielle Beltran, Simon Laubray, Renaud Ioos, Claude Husson, Benoit Marçais. Low persistence of Phytophthora ramorum (Werres, De Cock, and Man in ‘t Veld) in western France after implementation of eradication measures. Annals of Forest Science, 2024, 81 (1), pp.7. ⟨10.1186/s13595-024-01222-1⟩. ⟨hal-04567647⟩

24. Méline Saubin, Aurélien Tellier, Solenn Stoeckel, Axelle Andrieux, Fabien Halkett. Approximate Bayesian Computation applied to time series of population genetic data disentangles rapid genetic changes and demographic variations in a pathogen population. Molecular Ecology, 2024, 33 (10), ⟨10.1111/mec.16965⟩. ⟨hal-04122413⟩

25. José Eduardo Marqués-Gálvez, Gaurav Pandharikar, Veronica Basso, Annegret Kohler, Nathalie Lackus, et al.. Populus MYC2 orchestrates root transcriptional reprogramming of defence pathway to impair Laccaria bicolor ectomycorrhizal development. New Phytologist, 2024, 242 (2), pp.658-674. ⟨10.1111/nph.19609⟩. ⟨hal-04693914⟩

26. David Navarro, Elodie Drula, Delphine Chaduli, Robert Cazenave, Steven Ahrendt, et al.. Draft genome sequencing and assembly of Favolaschia claudopus CIRM-BRFM 2984 isolated from oak limbs. Journal of Genomics, 2024, 12, pp.44-46. ⟨10.7150/jgen.92255⟩. ⟨hal-04470283⟩

27. Lucas Auer, Marc Buée, Laure Fauchery, Vincent Lombard, Kerry Barry, et al.. Metatranscriptomics sheds light on the links between the functional traits of fungal guilds and ecological processes in forest soil ecosystems. New Phytologist, 2024, 242 (4), pp.1676-1690. ⟨10.1111/nph.19471⟩. ⟨hal-04602541⟩

28. Régis Fichot, Marlène Lefebvre, Marie Pégard, David Chassagnaud, Mathieu Bliard, et al.. Distinct trait syndromes and plasticity maintain similar performance between seedlings populations of the riparian tree species Populus nigra L.. Environmental and Experimental Botany, 2024, 218, pp.105598. ⟨10.1016/j.envexpbot.2023.105598⟩. ⟨hal-04334646⟩

29. Gonzalo Pérez-De-Lis, Béatrice Richard, Fabienne Quilès, Aurélie Deveau, Ignatius-Kristia Adikurnia, et al.. Multimodal imaging analysis in silver fir reveals coordination in cellulose and lignin deposition. Plant Physiology, 2024, 195, pp.2428. ⟨10.1093/plphys/kiae203⟩. ⟨hal-04564702⟩

30. Cintia Blanco Nouche, Laura Picard, Carine Cochet, Cédric Paris, Philippe Oger, et al.. Acidification-based mineral weathering mechanism involves a glucose/methanol/choline oxidoreductase in Caballeronia mineralivorans PML1(12). Applied and Environmental Microbiology, 2024, 90 (12), ⟨10.1128/aem.01221-24⟩. ⟨hal-04771098⟩

31. Méline Saubin, Solenn Stoeckel, Aurélien Tellier, Fabien Halkett. Neutral genetic structuring of pathogen populations during rapid adaptation. Journal of Heredity, In press, ⟨10.1093/jhered/esae036⟩. ⟨hal-04792713⟩

32. Méline Saubin, Jérôme Coville, Constance Xhaard, Pascal Frey, Samuel Soubeyrand, Fabien Halkett, Frédéric Fabre. A mechanistic-statistical approach to infer dispersal and demography from invasion dynamics, applied to a plant pathogen. Peer Community Journal, 2024, 4, pp.e9. ⟨10.24072/pcjournal.356⟩. ⟨hal-04430456⟩

33. Fadwa Khalfallah, Lucie Bon, Mohamed El Mazlouzi, Mark R. Bakker, Nicolas Fanin, et al.. “Ectomycorrhizal exploration type” could be a functional trait explaining the spatial distribution of tree symbiotic fungi as a function of forest humus forms. Mycorrhiza, 2024, ⟨10.1007/s00572-024-01146-8⟩. ⟨hal-04592027⟩

34. Oyut Dagva, Annabelle Thibessard, Jean-Noël Lorenzi, Victor Labat, Emilie Piotrowski, et al.. Correction of non-random mutational biases along a linear bacterial chromosome by the mismatch repair endonuclease NucS. Nucleic Acids Research, 2024, 52 (9), pp.5033-5047. ⟨10.1093/nar/gkae132⟩. ⟨hal-04495979⟩

35. Amal Ben Ayed, Imen Akrout, Karima Staita, Quentin Albert, Stephane Greff, et al.. Genome sequencing of Porostereum spadiceum to study the degradation of levofloxacin. Ecotoxicology and Environmental Safety, 2024, 270, pp.115808. ⟨10.1016/j.ecoenv.2023.115808⟩. ⟨hal-04384257⟩

36. François Maillard, Yannick Colin, Chloé Viotti, Marc Buée, Ivano Brunner, et al.. A cryptically diverse microbial community drives organic matter decomposition in forests. Applied Soil Ecology, 2024, 193 (1), pp.105148. ⟨10.1016/j.apsoil.2023.105148⟩. ⟨hal-04231371⟩

37. Juliette Jouhet, Eliana Alves, Yohann Boutté, Sylvain Darnet, Frédéric Domergue, et al.. Plant and algal lipidomes: Analysis, composition, and their societal significance. Progress in Lipid Research, 2024, 96, pp.101290. ⟨10.1016/j.plipres.2024.101290⟩. ⟨hal-04673335⟩

38. Gomes Marques I, Vieites-Blanco C, Rodríguez-González PM, Segurado P, Marques M, Barrento MJ, Fernandes MR, Cupertino A, Almeida H, Biurrun I, Corcobado T, Costa e Silva F, Díez J, Dufour S, Faria C; Ferreira MT, Ferreira V, Jansson R, Machado H, Marçais B, Moreira AC, Oliva J, Pielech R, Rodrigues AP, Soares David T, Solla A, Jung T (2024).The ADnet Bayesian Belief Network for Alder Decline: Integrating Empirical Data and Expert Knowledge. Science of the Total Environment, 947: 173619. https://doi.org/10.1016/j.scitotenv.2024.173619

39. Kraisitudomsook N, Ahrendt S, Riley R, Labutti K, Lipzen A, Daum C, Barry K, Grigoriev IV, Rämä T, Martin F, Smith ME (2024) On the origin of bird’s nest fungi: Phylogenomic analyses of fungi in the Nidulariaceae (Agaricales, Basidiomycota). Molecular Phylogenetics and Evolution 193: 108010.

40. Yan Q, Li S, Yan Q, Huo X, Wang C, Wang X, ….martin FM., …et al.  (2024) A genomic compendium of cultivated human gut fungi characterizes the gut mycobiome and its relevance to common diseases. Cell 187: 2969-2989.e24.

41. Li Z, Zhu Z, Qian K, Tang B, Han B, ….Martin FM……et al. (2024) Intraspecific diploidization of a halophyte root fungus drives heterosis. Nature Communications 15: 5872.

42. Liu Y, Zhang F, Devireddy AR, Ployet RA, Rush TA, Lu H, Hassan MM, …Martin FM…et al (2024) A small secreted protein serves as a plant-derived effector mediating symbiosis between Populus and Laccaria bicolor. Horticultural Research 11: uhae232.

43. Van Ingen-Buijs VA, Van westerhoven AC, Skiadas P, Zuijdgeest XCL, Haridas S, …Martin F…..et al. (2024) Phyllosticta paracitricarpa is synonymous with the EU quarantine fungus P. citricarpa based on phylogenomic analyses. Fungal Genetics and Biology 175,

44. Li R, Shi W, Zhang P, Ma J, Zou R, Zhang X, Kohler A, Martin FM, Zhang F (2024) The poplar SWEET1c glucose transporter plays a key role in the ectomycorrhizal symbiosis. New Phytologist 244: 2518-2535.

45. Martin FM, Öpik M, Dickie IA (2024) Mycorrhizal research now: from the micro- to the macro-scale. New Phytologist 242: 1399-1403.

46. Hacquard S, Martin F (2024) The chemical language of plant– microbe–microbe associations. New Phytologist 244: 739–742

47. Martin F, Van Der Heijden MGA (2024) The mycorrhizal symbiosis: research frontiers in genomics, ecology, and agricultural application. New Phytologist 242: 1486-1506.

48. Zhang Y, Feng H, Druzhinina IS, Xie X, Wang E, Martin F, YUAN Z (2024) Phosphorus/nitrogen sensing and signaling in diverse root-fungus symbioses. Trends in Microbiology 32: 200-215.

49. Sánchez-García M, Miyauchi S, Drula E, Martin F, Ryberg M (2024) General Trends of Genomic Signatures of the Ectomycorrhizal Symbiosis in Fungi: A Comparison Across Multiple Lineages in Fungal Genomics, The Mycota XIII (Nowrousian M, Stajich JE, Eds), Springer Nature Switzerland, pp 189-202.

50. Plett JM, Kohler A, Martin F (2024) Masters of manipulation: how our molecular understanding of model symbiotic fungi and their hosts is changing the face of “mutualism” in Fungal Associations, Springer International Publishing, pp. 249-272.