Publications 2019

  1. Akroume E, Maillard F, Bach C, Hossann C, Brechet C, Angeli N, Zeller B, Saint-André L, Buée M 2019 First evidences that the ectomycorrhizal fungus Paxillus involutus mobilizes nitrogen and carbon from saprotrophic fungus necromass. Environ Microbiol 21:197-208
  2. Anasontzis GE, Lebrun MH, Haon M, Champion C, Kohler A, Lenfant N, Martin F, O’Connell RJ, Riley R, Grigoriev IV, Henrissat B, Berrin JG, Rosso MN 2019 Broad-specificity GH131 β-glucanases are a hallmark of fungi and oomycetes that colonize plants. Environ Microbiol 21:2724-2739
  3. Armaleo D, Müller O, Lutzoni F, Andrésson á“S, Blanc G, Bode HB, Collart FR, Dal Grande F, Dietrich F, Grigoriev IV, Joneson S, Kuo A, Larsen PE, Logsdon JM Jr, Lopez D, Martin F, May SP, McDonald TR, Merchant SS, Miao V, Morin E, Oono R, Pellegrini M, Rubinstein N, Sanchez-Puerta MV, Savelkoul E, Schmitt I, Slot JC, Soanes D, Szövényi P, Talbot NJ, Veneault-Fourrey C, Xavier BB 2019 The lichen symbiosis re-viewed through the genomes of Cladonia grayi and its algal partner Asterochloris glomerata. BMC Genomics 20:605
  4. Baragatti M, Grollemund PM, Montpied P, Dupouey JL, Gravier J, Murat C, Le Tacon F 2019 Influence of annual climatic variations, climate changes, and sociological factors on the production of the Périgord black truffle (Tuber melanosporum Vittad ) from 1903-1904 to 1988-1989 in the Vaucluse (France). Mycorrhiza 29:113-125
  5. Barbi F, Kohler A, Barry K, Baskaran P, Daum C, Fauchery L, Ihrmark K, Kuo A, LaButti K, Lipzen A, Morin E, Grigoriev IV, Henrissat B, Lindahl BD, Martin F 2019 Fungal ecological strategies reflected in gene transcription – a case study of two litter decomposers. Environ Microbiol doi: 10 1111/1462-2920 14873
  6. Bartholomé J, Brachi B, Maráçais B, Mougou-Hamdane A, Bodénès C, Plomion C, Robin C, Desprez-Loustau ML 2019 The genetics of exapted resistance to two exotic pathogens in pedunculate oakNew Phytoldoi: 10 1111/nph 16319
  7. Benucci GMN, Haridas S, Labutti K, Marozzi G, Antonielli L, Sanchez S, Marco P, Wang X, Barry K, Lipzen A, Chovatia M, Hundley H, Baciarelli Falini L, Murat C, Martin F, Albertini E, Donnini D, Grigoriev IV, Bonito G 2019 Draft Genome Sequence of the Ectomycorrhizal Ascomycete Sphaerosporella brunnea. Microbiol Resour Announc8, pii: e00857-19
  8. Chang, Y., Desirò, A., Na, H., Sandor, L., Lipzen, A., Clum, A., Barry, K., Grigoriev, I. V., Martin, F. M., Stajich, J. E., Smith, M. E., Bonito, G., & Spatafora, J. W. (2019). Phylogenomics of Endogonaceae and evolution of mycorrhizas within Mucoromycota. New Phytologist, 222(1), 511‑525. https://doi.org/10.1111/nph.15613
  9. Coninx L, Smisdom N, Kohler A, Arnauts N, Ameloot M, Rineau F, Colpaert JV, Ruytinx J 2019 SlZRT2 encodes a ZIP family Zn transporter with dual localization in the ectomycorrhizal fungus Suillus luteus. Frontiers in microbiology 10, 2251
  10. Cosson, J. F., Brun-Jacob, A., Marchand, J., Boniface, P., Ortmans, C., Salvat, G., Armand, J. M., & Frey-Klett, P. (2019). La recherche participative CiTIQUE. Santé Publique, S1(HS), 89. https://doi.org/10.3917/spub.190.0089
  11. Csiszá¡r J, Hecker A, Labrou NE, Schröder P, Riechers DE 2019 Editorial: Plant Glutathione Transferases: Diverse, Multi-Tasking Enzymes With Yet-to-Be Discovered FunctionsFront Plant Sci 10:1304
  13. Deveau A, Clowez P, Petit F, Maurice JP, Todesco F, Murat C, Harroué M, Ruelle J, Le Tacon F 2019 New insights into black truffle biology: discovery of the potential connecting structure between a Tuber aestivum ascocarp and its host root. Mycorrhiza 29:219-226
  14. De Guillen K, Lorrain C, Tsan P, Barthe P, Petre B, Saveleva N, Rouhier N, Duplessis S, Padilla A, Hecker A 2019Structural genomics applied to the rust fungus Melampsora la. rici-populina reveals two candidate effector proteins adopting cystine knot and NTF2-like protein folds. Sci Rep 9:18084
  15. Gargiulo, R., Saubin, M., Rizzuto, G., West, B., Fay, M. F., Kallow, S., & Trivedi, C. (2019). Genetic diversity in British populations of Taxus baccata L.: Is the seedbank collection representative of the genetic variation in the wild?. Biological Conservation, 233, 289-297. DOI: https://doi.org/10.1016/j.biocon.2019.01.014
  16. Goberna, M., Montesinos‐Navarro, A., Valiente‐Banuet, A., Colin, Y., Gómez‐Fernández, A., Donat, S., Navarro‐Cano, J. A., & Verdú, M. (2019). Incorporating phylogenetic metrics to microbial co‐occurrence networks based on amplicon sequences to discern community assembly processes. Molecular Ecology Resources, 19(6), 1552‑1564. https://doi.org/10.1111/1755-0998.13079
  17. Gomez-Gallego M., Gommers R., Bader M.K-F., Williams N.M. (2019). Modelling the key drivers of an aerial Phytophthora foliar disease epidemic, from the needles to the whole plant. PLoS ONE, 14 (5): e0216161. DOI: https://doi.org/10.1371/journal.pone.0216161. Réf. HAL: hal-0322068
  18. Gomez-Gallego M., Leboldus J., Bader M.K-F., Hansen E., Donaldson L., Williams N.M. (2019). Contrasting the Pathogen Loads in Co-Existing Populations of Phytophthora pluvialis and Nothophaeocryptopus gaeumannii in Douglas Fir Plantations in New Zealand and the Pacific Northwest United States. Phytopathology, 109(11): 1908-1921. DOI: https://doi.org/10.1094/PHYTO-12-18-0479-R. Réf. HAL: hal-03220673
  19. Guarnaccia V, Gehrmann T, Silva-Junior GJ, Fourie PH, Haridas S, Vu D, Spatafora J, Martin FM, Robert V, Grigoriev IV, Groenewald JZ, Crous PW 2019 Phyllosticta citricarpa and sister species of global importance to Citrus. Mol Plant Pathol 20:1619-1635
  20. Gurrieri L, Distefano L, Pirone C, Horrer D, Seung D, Zaffagnini M, Rouhier N, Trost P, Santelia D, Sparla F 2019 The Thioredoxin-Regulated Amylase 3 of Arabidopsis thaliana Is a Target of S-Glutathionylation. Front Plant Sci 10:993
  21. Jacquot, J. P., & Zaffagnini, M. (2019). Thioredoxin and Glutaredoxin Systems Antioxidants Special Issue. Antioxidants, 8(3), 68. https://doi.org/10.3390/antiox8030068
  22. Keriö S., Daniels H.A., Gomez-Gallego M., Tabima J.F., Lenz R.R., Sondreli K.L., Grünwald, N.J., Williams N.M., McDougal R., LeBoldus J.M. (2019). From genomes to forest management – tackling invasive Phytophthora species in the era of genomics. Canadian Journal of Plant Pathology, 42(1): 1-29. DOI: https://doi.org/10.1080/07060661.2019.1626910. Réf. HAL: hal-03220681
  23. Labbé J, Muchero W, Czarnecki O, Wang J, Wang X, Bryan AC, Zheng K, Yang Y, Xie M, Zhang J, Wang D, Meidl P, Wang H, Morrell-Falvey JL, Cope KR, Maia LGS, Ané JM, Mewalal R, Jawdy SS, Gunter LE, Schackwitz W, Martin J, Le Tacon F, Li T, Zhang Z, Ranjan P, Lindquist E, Yang X, Jacobson DA, Tschaplinski TJ, Barry K, Schmutz J, Chen JG, Tuskan GA 2019 Mediation of plant-mycorrhizal interaction by a lectin receptor-like kinase Nat Plants 5:676-680
  24. Le Cam, B., Sargent, D., Gouzy, J., Amselem, J., Bellanger, M. N., Bouchez, O., Brown, S., Caffier, V., de Gracia, M., Debuchy, R., Duvaux, L., Payen, T., Sannier, M., Shiller, J., Collemare, J., & Lemaire, C. (2019). Population Genome Sequencing of the Scab Fungal Species Venturia inaequalis, Venturia pirina, Venturia aucupariae and Venturia asperata. G3 Genes|Genomes|Genetics, 9(8), 2405‑2414. https://doi.org/10.1534/g3.119.400047
  25. Legeay J, Husson C, Cordier T, Vacher C, Marcais B, Buée M 2019 Comparison and validation of Oomycetes metabarcoding primers for Phytophthora high throughput sequencing. Journal of Plant Pathology 101, 743-748
  26. Leonardi P, Murat C, Puliga F, Iotti M, Zambonelli A 2019 Ascoma genotyping and mating type analyses of mycorrhizas and soil mycelia of Tuber borchii in a truffle orchard established by mycelial inoculated plants. Environ Microbioldoi: 10 1111/1462-2920 14777
  27. Liao HL, Bonito G, Rojas JA, Hameed K, Wu S, Schadt CW, Labbé J, Tuskan GA, Martin F, Grigoriev IV, Vilgalys R 2019 Fungal Endophytes of Populus trichocarpa Alter Host Phenotype, Gene Expression, and Rhizobiome Composition. Mol Plant Microbe Interact32:853-864
  28. Lofgren, L. A., Uehling, J. K., Branco, S., Bruns, T. D., Martin, F., & Kennedy, P. G. (2019). Genome‐based estimates of fungal rDNA copy number variation across phylogenetic scales and ecological lifestyles. Molecular Ecology, 28(4), 721‑730. https://doi.org/10.1111/mec.14995
  29. Lorrain, C., Gonçalves Dos Santos, K. C., Germain, H., Hecker, A., & Duplessis, S. (2019). Advances in understanding obligate biotrophy in rust fungi. New Phytologist, 222(3), 1190‑1206. https://doi.org/10.1111/nph.15641
  30. Maillard, F., Leduc, V., Bach, C. et al. Microbial Enzymatic Activities and Community-Level Physiological Profiles (CLPP) in Subsoil Layers Are Altered by Harvest Residue Management Practices in a Tropical Eucalyptus grandis Plantation. Microb Ecol 78, 528–533 (2019). https://doi.org/10.1007/s00248-018-1298-6
  31. Marçais, B. (2018). Interactions entre changement climatique et agents pathogènes. Revue Forestière Française, 6, 645. https://doi.org/10.4267/2042/70316
  32. Mewalal R, Yin H, Hu R, Jawdy S, Vion P, Tuskan GA, Le Tacon F, Labbé JL, Yang X 2019 Identification of Populus Small RNAs Responsive to Mutualistic Interactions With Mycorrhizal Fungi, Laccaria bicolor and Rhizophagus irregularis. Front Microbiol10:515
  33. Meyer AJ, Riemer J, Rouhier N 2019 Oxidative protein folding: state-of-the-art and current avenues of research in plants. New Phytol 221:1230-1246
  34. Millet LJ, Aufrecht J, Labbé J, Uehling J, Vilgalys R, Estes ML, Miquel Guennoc C, Deveau A, Olsson S, Bonito G, Doktycz MJ, Retterer ST 2019Increasing access to microfluidics for studying fungi and other branched biological structures. Fungal Biol Biotechnol 06:01doi: 10 1186/s40694-019-0071-z
  35. Morin E, Miyauchi S, San Clemente H, Chen ECH, Pelin A, de la Providencia I, Ndikumana S, Beaudet D, Hainaut M, Drula E, Kuo A, Tang N, Roy S, Viala J, Henrissat B, Grigoriev IV, Corradi N, Roux C, Martin FM 2019 Comparative genomics of Rhizophagus irregularis, R cerebriforme, R diaphanus and Gigaspora rosea highlights specific genetic features in Glomeromycotina. New Phytol 222:1584-1598
  36. Nicolitch O, Feucherolles M, Churin JL, Fauchery L, Turpault MP, Uroz S 2019 A microcosm approach highlights the response of soil mineral weathering bacterial communities to an increase of K and Mg availability. Sci Rep 9:14403
  37. Pauvert C., Buée M., Laval V., Edel-Hermann V., Fauchery L., Gautier A., Lesur I., Vallance J., Vacher V. 2019. Bioinformatics matters: the accuracy of plant and soil community data is highly dependent on the metabarcoding pipeline. Fungal Ecology 41: 23-33
  38. Pellegrin C, Daguerre Y, Ruytinx J, Guinet F, Kemppainen M, Frey NFD, Puech-Pagès V, Hecker A, Pardo AG, Martin FM, Veneault-Fourrey C 2019Laccaria bicolor MiSSP8 is a small-secreted protein decisive for the establishment of the ectomycorrhizal symbiosis. Environ Microbiol 21:3765-3779
  39. Pellegrin C, Martin F, Veneault-Fourrey C 2019 Molecular Signalling During the Ectomycorrhizal Symbiosis. Biology of the Fungal Cell, 95-109
  40. Pérez Izquierdo L., Zabal-Aguirre M., Gonzalez-Martinez S., Buée M., Verdu M., Rincon A., Goberna M. 2019. Plant intraspecific variation modulates nutrient cycling through its belowground rhizospheric microbiome. Journal of Ecology 107: 1594-1605
  41. Petit-Houdenot Y, Degrave A, Meyer M, Blaise F, Ollivier B, Marais CL, Jauneau A, Audran C, Rivas S, Veneault-Fourrey C, Brun H, Rouxel T, Fudal I, Balesdent MH 2019 A two genes – for – one gene interaction between Leptosphaeria maculans and Brassica napus. New Phytol 223:397-411
  42. Plassart P, Prévost-Bouré NC, Uroz S, Dequiedt S, Stone D, Creamer R, Griffiths RI, Bailey MJ, Ranjard L, Lemanceau P 2019 Soil parameters, land use, and geographical distance drive soil bacterial communities along a European transect. Sci Rep 9:605
  43. Rey P, Taupin-Broggini M, Couturier J, Vignols F, Rouhier N 2019 Is There a Role for Glutaredoxins and BOLAs in the Perception of the Cellular Iron Status in Plants? Front Plant Sci10:712
  44. Schenkel D, Deveau A, Niimi J, Mariotte P, Vitra A, Meisser M, Buttler A, Splivallo R 2019 Linking soil’s volatilome to microbes and plant roots highlights the importance of microbes as emitters of belowground volatile signals. Environ Microbiol 2019 doi: 10 1111/1462-2920 14599
  45. Scholten R., Hill J., Werner W., Buddenbaum H., Dash J., Gomez-Gallego M., Rolando C.A., Pearse G.D., Hartley R., Estarija H.J., Watt M.S. (2019). Hyperspectral VNIR-spectroscopy and imagery as a tool for monitoring herbicide damage in wilding conifers. Biological Invasions, 21(11): 3395-3413. DOI: https://doi.org/10.1007/s10530-019-02055-0. Réf. HAL: hal-03220668
  46. Schwartz M, Perrot T, Morel-Rouhier M, Mulliert G, Gelhaye E, Didierjean C, Favier F 2019 The structure of Trametes versicolor glutathione transferase Omega 3S bound to its conjugation product glutathionyl-phenethylthiocarbamate reveals plasticity of its active site. Protein Sci 28:1143-1150
  47. Selles B, Moseler A, Rouhier N, Couturier J 2019 Rhodanese domain-containing sulfurtransferases: multifaceted proteins involved in sulfur trafficking in plants. J Exp Bot 70:4139-4154
  48. Splivallo R, Vahdatzadeh M, Maciá¡-Vicente JG, Molinier V, Peter M, Egli S, Uroz S, Paolocci F, Deveau A 2019 Orchard Conditions and Fruiting Body Characteristics Drive the Microbiome of the Black Truffle Tuber aestivum. Front Microbiol 10:1437
  49. Strullu‐Derrien, C., Bernard, S., Spencer, A. R. T., Remusat, L., Kenrick, P., & Derrien, D. (2019). On the structure and chemistry of fossils of the earliest woody plant. Palaeontology, 62(6), 1015‑1026. https://doi.org/10.1111/pala.12440
  50. Sylvestre-Gonon E, Law SR, Schwartz M, Robe K, Keech O, Didierjean C, Dubos C, Rouhier N, Hecker A 2019 Functional, Structural and Biochemical Features of Plant Serinyl-Glutathione Transferases. Front Plant Sci 10:608
  51. Tan H, Kohler A, Miao R, Liu T, Zhang Q, Zhang B, Jiang L, Wang Y, Xie L, Tang J, Li X, Liu L, Grigoriev IV, Daum C, LaButti K, Lipzen A, Kuo A, Morin E, Drula E, Henrissat B, Wang B, Huang Z, Gan B, Peng W, Martin FM 2019 Multi-omic analyses of exogenous nutrient bag decomposition by the black morel Morchella importuna reveal sustained carbon acquisition and transferring. Environ Microbiol 21:3909-3926
  52. Tao SQ, Cao B, Morin E, Liang YM, Duplessis S 2019 Comparative transcriptomics of Gymnosporangium sppteliospores reveals a conserved genetic program at this specific stage of the rust fungal life cycle. BMC Genomics 20:723
  53. Todesco F, Belmondo S, Guignet Y, Laurent L, Fizzala S, Le Tacon F, Murat C 2019 Soil temperature and hydric potential influences the monthly variations of soil Tuber aestivum DNA in a highly productive orchard. Sci Rep 9:12964
  54. Touraine B, Vignols F, Przybyla-Toscano J, Ischebeck T, Dhalleine T, Wu HC, Magno C, Berger N, Couturier J, Dubos C, Feussner I, Caffarri S, Havaux M, Rouhier N, Gaymard F 2019 Iron-sulfur protein NFU2 is required for branched-chain amino acid synthesis in Arabidopsis roots. J Exp Bot 70:1875-1889
  55. Uroz, S., & Oger, P. (2019). Corrigendum to “Caballeronia mineralivorans sp. nov., isolated from oak-Scleroderma citrinum mycorrhizosphere” [Syst. Appl. Microbiol. 40 (2017) 345–351]. Systematic and Applied Microbiology, 42(3), 423‑424. https://doi.org/10.1016/j.syapm.2019.03.001
  56. Uroz S, Courty PE, Oger P 2019 Plant Symbionts Are Engineers of the Plant-Associated Microbiome. Trends Plant Sci 24:905-916
  57. Vahdatzadeh M, Deveau A, Splivallo R 2019 Are bacteria responsible for aroma deterioration upon storage of the black truffle Tuber aestivum: A microbiome and volatilome study. Food Microbiol 84:103251
  58. Varga T, Krizsán K, Földi C, Dima B, Sánchez-García M, Sánchez-Ramírez S, Szöllősi GJ, Szarkándi JG, Papp V, Albert L, Andreopoulos W, Angelini C, Antonín V, Barry KW, Bougher NL, Buchanan P, Buyck B, Bense V, Catcheside P, Chovatia M, Cooper J, Dämon W, Desjardin D, Finy P, Geml J, Haridas S, Hughes K, Justo A, Karasiński D, Kautmanova I, Kiss B, Kocsubé S, Kotiranta H, LaButti KM, Lechner BE, Liimatainen K, Lipzen A, Lukács Z, Mihaltcheva S, Morgado LN, Niskanen T, Noordeloos ME, Ohm RA, Ortiz-Santana B, Ovrebo C, Rácz N, Riley R, Savchenko A, Shiryaev A, Soop K, Spirin V, Szebenyi C, Tomšovský M, Tulloss RE, Uehling J, Grigoriev IV, Vágvölgyi C, Papp T, Martin FM, Miettinen O, Hibbett DS, Nagy LG 2019 Megaphylogeny resolves global patterns of mushroom evolution. Nat Ecol Evol 3:668-678
  59. Wong JW, Lutz A, Natera S, Wang M, Ng V, Grigoriev IV, Martin F, Roessner U, Anderson IC, Plett JM 2019 The influence of contrasting microbial lifestyles on the pre-symbiotic metabolite responses of Eucalyptus grandis roots. Frontiers in Ecology and Evolution
  60. Zaffagnini M, Fermani S, Marchand CH, Costa A, Sparla F, Rouhier N, Geigenberger P, Lemaire SD, Trost P 2019 Redox Homeostasis in Photosynthetic Organisms: Novel and Established Thiol-Based Molecular Mechanisms. Antioxid Redox Signal 31:155-210
  61. Zannini F, Moseler A, Bchini R, Dhalleine T, Meyer AJ, Rouhier N, Couturier J 2019 The thioredoxin-mediated recycling of Arabidopsis thaliana GRXS16 relies on a conserved C-terminal cysteine. Biochim Biophys Acta Gen Subj 1863:426-436
  62. Zapata-Carbonell, J., Bégeot, C., Carry, N., Choulet, F., Delhautal, P., Gillet, F., Girardclos, O., Mouly, A., & Chalot, M. (2019). Spontaneous ecological recovery of vegetation in a red gypsum landfill : Betula pendula dominates after 10 years of inactivity. Ecological Engineering, 132, 31‑40. https://doi.org/10.1016/j.ecoleng.2019.03.013