Publications 2014

1. Structural and functional characterization of tree proteins involved in redox regulation: a new frontier in forest scienceJP Jacquot, J Couturier, C Didierjean, E Gelhaye, M Morel-Rouhier, … Annals of Forest Science, 1-16
2. Glutathionyl-hydroquinone reductases from poplar are plastidial proteins that deglutathionylate both reduced and oxidized quinones PA Lallement, E Meux, JM Gualberto, S Dumarcay, F Favier, C Didierjean, … FEBS Letters
3. The poplar phi class glutathione transferase: expression, activity and structure of GSTF1 H Pégeot, C Koh, B Petre, S Mathiot, S Duplessis, A Hecker, C Didierjean, …Name: Frontiers in Plant Science 5, 712
4. The effect of elevated carbon dioxide on the interaction between Eucalyptus grandis and diverse isolates of Pisolithus sp. is associated with a complex shift in the root transcriptome JM Plett, A Kohler, A Khachane, K Keniry, KL Plett, F Martin, IC Anderson. New Phytologist
5. The mutualist Laccaria bicolor expresses a core gene regulon during the colonization of diverse host plants and a variable regulon to counteract host-specific defenses JM Plett, E Tisserant, A Brun, E Morin, IV Grigoriev, A Kuo, FM Martin, … Molecular Plant-Microbe Interactions
6. Occurrence of lignin degradation genotypes and phenotypes among prokaryotes H Tian, AM Pourcher, T Bouchez, E Gelhaye, P Peu. Applied Microbiology and Biotechnology, 1-18
7. Expanding genomics of mycorrhizal symbiosis. A Kuo, A Kohler, FM Martin, IV Grigoriev. Frontiers in Microbiology. doi: 10.3389/fmicb.2014.00582
8. Gluconic acid-producing Pseudomonas sp. prevent γ-actinorhodin biosynthesis by Streptomyces coelicolor A3 (2). J Galet, A Deveau, L Hôtel, P Leblond, P Frey-Klett, B Aigle. Archives of Microbiology, 1-9
9. Evolution of a symbiotic receptor through gene duplications in the legume-rhizobium mutualism. S De Mita, A Streng, T Bisseling, R Geurts. 2014. New Phytol. 201:961-972.
10. Patterns of nucleotide diversity at photoperiod related genes in Norway spruce [Picea abies (L.) Karst.]. T Källman, S De Mita, H Larsson, N Gyllenstrand, M Heuertz, L Parducci,… PLoS One 9:e95306.
11. Amount of information Needed for Model Choice in Approximate Bayesian Computation. M Stocks, M Siol, M Lascoux, S. De Mita. PLoS One 9:e99581.
12. The roles of glutaredoxins ligating Fe-S clusters: Sensing, transfer or repair functions? J Couturier, J Przybyla-Toscano, T Roret, C Didierjean, N Rouhier. Biochimica et Biophysica Acta (BBA)-Molecular Cell Research
13. OmGOGAT disruption in the ericoid mycorrhizal fungus Oidiodendron maius induces reorganization of the N pathway and reduces tolerance to heavy-metals. HR Khouja, S Daghino, S Abbà, F Boutaraa, M Chalot, D Blaudez, …Fungal Genetics and Biology
14. X-ray structures of Nfs2, the plastidial cysteine desulfurase from Arabidopsis thaliana T Roret, H Pégeot, J Couturier, G Mulliert, N Rouhier, C Didierjean. Acta Crystallographica Section F: Structural Biology Communications 70
15. Genomic and transcriptomic analysis of Laccaria bicolor CAZome reveals insights into polysaccharides remodelling during symbiosis establishment C Veneault-Fourrey, C Commun, A Kohler, E Morin, R Balestrini, J Plett, … Fungal Genetics and Biology
16. Genome-wide patterns of segregation and linkage disequilibrium: the construction of a linkage genetic map of the poplar rust fungus Melampsora larici-populina M Pernaci, S De_mita, A Andrieux, J Pétrowski, F Halkett, S Duplessis, … Frontiers in Plant Science 5, 454
17. Patterns of genomic variation in the poplar rust fungus Melampsora larici-populina identify pathogenesis-related factors A Persoons, E Morin, C Delaruelle, T Payen, F Halkett, P Frey, S De Mita, … Plant-Microbe Interaction 5, 450
18. The still mysterious roles of cysteine-containing glutathione transferases in plants P Lallement, B Brouwer, O Keech, A Hecker, N Rouhier. Experimental Pharmacology and Drug Discovery 5, 192
19. Transcriptomic responses of Phanerochaete chrysosporium to oak acetonic extracts: focus on a new glutathione transferase. A Thuillier, K Chibani, G Belli, E Herrero, S Dumarçay, P Gérardin, … Applied and Environmental Microbiology, AEM. 02103-14
20. The black truffle methylome: non-exhaustive DNA methylation-mediated transposon silencing in a complex fungal genome with massive repeat element content B Montanini, PY Chen, M Morselli, A Jaroszewicz, D Lopez, F Martin, … Genome Biology 15 (7), 411
21. Effector proteins of rust fungi B Petre, DL Joly, S Duplessis. Frontiers in Plant Science 22, 23
22. Pairwise Transcriptomic Analysis of the Interactions Between the Ectomycorrhizal Fungus Laccaria bicolor S238N and Three Beneficial, Neutral and Antagonistic Soil Bacteria. A Deveau, M Barret, AG Diedhiou, J Leveau, W de Boer, F Martin, … Microbial ecology, 1-14
23. Cross Kingdom Functional Conservation of the Core Universally Conserved Threonylcarbamoyladenosine tRNA Synthesis Enzymes. PC Thiaville, B El Yacoubi, L Perrochia, A Hecker, M Prigent, JJ Thiaville, … Eukaryotic Cell, EC. 00147-14
24. Latent homology and convergent regulatory evolution underlies the repeated emergence of yeasts LG Nagy, RA Ohm, GM Kovács, D Floudas, R Riley, A Gácser, M Sipiczki, … Nature Communications 5
25. On the current status of Phakopsora pachyrhizi genome sequencing M Loehrer, A Vogel, B Huettel, R Reinhardt, V Benes, S Duplessis, … Frontiers in Plant Science 5, 377
26. Structural and spectroscopic insights into BolA-glutaredoxin complexes. T Roret, P Tsan, J Couturier, B Zhang, MK Johnson, N Rouhier, … Journal of Biological Chemistry, jbc. M114. 572701
27. Genomics of arbuscular mycorrhizal fungi: out of the shadows. M Malbreil, E Tisserant, F Martin, C Roux, FM Martin. Advances in Botanical Research 70, 259-290
28. Forty years of inoculating seedlings with truffle fungi: past and future perspectives. C Murat, Mycorrhiza July 2014
29. Leaf and Root-Associated Fungal Assemblages Do Not Follow Similar Elevational Diversity Patterns. A Coince, T Cordier, J Lengellé, E Defossez, C Vacher, C Robin, M Buée, … PLOS ONE 9 (6), e100668
30. Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi R. Riley, A A. Salamov, D.W. Brown, L.G. Nagyc, … Proceedings of the National Academy of Sciences
31. The genome of the white-rot fungus Pycnoporus cinnabarinus: a basidiomycete model with a versatile arsenal for lignocellulosic biomass breakdown. A Levasseur, A Lomascolo, O Chabrol, FJ Ruiz-Dueñas, E Boukhris-Uzan, … BMC genomics 15 (1), 486
32. Thiol-based redox homeostasis and signalling FJ Cejudo, A Meyer, JP Reichheld, N Rouhier, JA Traverso. Plant Physiology 5, 266
33. Effector MiSSP7 of the mutualistic fungus Laccaria bicolor stabilizes the Populus JAZ6 protein and represses jasmonic acid (JA) responsive genes. JM Plett, Y Daguerre, S Wittulsky, A Vayssières, A Deveau, SJ Melton, …Proceedings of the National Academy of Sciences,
34. Structural and enzymatic insights into Lambda glutathione transferases from Populus trichocarpa, monomeric enzymes constituting an early divergent class specific to terrestrial plants. PA Lallement, E Meux, J Gualberto, P Prosper, C Didierjean, F Saul, A Haouz,… Biochem J.
35. Gene expression in mycorrhizal orchid protocorms suggests a friendly plant–fungus relationship S Perotto, M Rodda, A Benetti, F Sillo, E Ercole, M Rodda, M Girlanda, … Planta, 1-13
36. Ectomycorrhizal Cortinarius species participate in enzymatic oxidation of humus in northern forest ecosystems. I Bödeker, KE Clemmensen, W Boer, F Martin, Å Olson, BD Lindahl. New Phytologist
37. Modeling climate impact on an emerging disease, the Phytophthora alni induced alder decline J Aguayo, F Elegbede, C Husson, FX Saintonge, B Marçais. Global Change Biology
38. Microsatellite analysis of Icelandic populations of the poplar fungal pathogen Melampsora larici-populina shows evidence of repeated colonization events SE Elefsen, P Frey, H Sverrisson, JH Hallsson. European Journal of Plant Pathology, 1-12
39. Genome analysis of poplar LRR-RLP gene clusters reveals RISP, a defense-related gene coding a candidate endogenous peptide elicitor. B Petre, S Hacquard, S Duplessis, N Rouhier. Frontiers in Plant Science
40. Overview of the functional virulent genome of the coffee leaf rust pathogen Hemileia vastatrix with an emphasis on early stages of infection. P Talhinhas, HG Azinheira, B Vieira, A Loureiro, S Tavares, D Batista, … Frontiers in Plant Science
41. Putative roles of glutaredoxin-BolA holo-heterodimers in plants. T Dhalleine, N Rouhier, J Couturier. Plant Signaling & Behavior 9 (3), e28564
42. Adventitious root formation in tree species: involvement of transcription factors. V Legué, A Rigal, RP Bhalerao. Physiologia Plantarum
43. Characterization of poplar GrxS14 in different structural forms L Wang, Y Li, JP Jacquot, N Rouhier, B Xia. Protein & Cell
44. How Do Filamentous Pathogens Deliver Effector Proteins into Plant Cells?. B. Petre, S. Kamoun. Plos Biology.
45. Climatic variations explain annual fluctuations in French Périgord black truffle wholesale markets but do not explain the decrease in black truffle production over the last 48 years. F Le Tacon, B Marçais, M Courvoisier, C Murat P Montpied M Becker. Mycorrhiza
46. Populus trichocarpa and Populus deltoides Exhibit Different Metabolomic Responses to Colonization by the Symbiotic fungus Laccaria bicolor. TJ Tschaplinski, JM Plett, N Engle, A Deveau, K Cushman, MZ Martin, … Molecular Plant-Microbe Interactions
47. Ethylene and jasmonic acid act as negative modulators during mutualistic symbiosis between Laccaria bicolor and Populus roots. J. Plett, A. Khatchane, M. Ouassou, B. Sundberg, A. Kohler, F. Martin. New Phytologist
48. Genome Sequence of the Mycorrhizal Helper Bacterium Pseudomonas fluorescens BBc6R8. A Deveau, H Gross, E Morin, T Karpinets, S Utturkar, S Mehnaz, F Martin, P … Genome Announcements 2 (1), e01152-13